KEGG   PATHWAY: pswi03030
Entry
pswi03030                   Pathway                                
Name
DNA replication - Pseudoliparis swirei (Mariana hadal snailfish)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
pswi03030  DNA replication
pswi03030

Organism
Pseudoliparis swirei (Mariana hadal snailfish) [GN:pswi]
Gene
130188502  pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
130189129  mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
130189469  pold4; DNA polymerase delta subunit 4 isoform X1 [KO:K03505]
130190208  rfc1; replication factor C subunit 1 [KO:K10754]
130190356  [KO:K07466]
130190794  rnaseh2a; ribonuclease H2 subunit A isoform X1 [KO:K10743] [EC:3.1.26.4]
130190985  lig1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
130192518  pole3; DNA polymerase epsilon subunit 3 isoform X1 [KO:K02326] [EC:2.7.7.7]
130192585  dna2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
130192820  rpa3; replication protein A 14 kDa subunit [KO:K10740]
130194019  pole4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
130194277  rfc4; replication factor C subunit 4 [KO:K10755]
130196417  rfc5; replication factor C subunit 5 [KO:K10756]
130196459  pcna; proliferating cell nuclear antigen [KO:K04802]
130196511  pold2; DNA polymerase delta subunit 2 [KO:K02328]
130196651  pole; DNA polymerase epsilon catalytic subunit A isoform X1 [KO:K02324] [EC:2.7.7.7]
130197810  zgc:110269; probable flap endonuclease 1 homolog [KO:K04799] [EC:3.1.-.-]
130197892  mcm6; LOW QUALITY PROTEIN: DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
130197932  mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
130198182  [KO:K10739]
130198227  pold3; DNA polymerase delta subunit 3 [KO:K03504]
130199877  rfc2; replication factor C subunit 2 [KO:K10755]
130200159  prim1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
130200529  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
130201007  pole2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
130202185  rnaseh1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
130202489  mcm3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
130203351  rnaseh2b; ribonuclease H2 subunit B [KO:K10744]
130205935  pola1; DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
130206171  fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
130207370  prim2; DNA primase large subunit [KO:K02685]
130208048  mcm2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
130209520  mcm7; DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
130209704  pola2; DNA polymerase alpha subunit B [KO:K02321]
130209876  rnaseh2c; ribonuclease H2 subunit C [KO:K10745]
130210393  rfc3; replication factor C subunit 3 [KO:K10756]
130210667  rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
130212881  rpa2; replication protein A 32 kDa subunit [KO:K10739]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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