KEGG   PATHWAY: rn00470
Entry
rn00470                     Pathway                                
Name
D-Amino acid metabolism
Class
Metabolism; Metabolism of other amino acids
Pathway map
rn00470  D-Amino acid metabolism
rn00470

Module
M00947  D-Arginine racemization, D-arginine => L-arginine [PATH:rn00470]
M00948  Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:rn00470]
M00949  Staphylopine biosynthesis, L-histidine => staphylopine [PATH:rn00470]
Other DBs
GO: 0046416
Reaction
R00221  D-serine ammonia-lyase
R00260  glutamate racemase
R00264  2,5-dioxopentanoate:NADP+ 5-oxidoreductase
R00279  D-Glutamate:oxygen oxidoreductase (deaminating)
R00359  D-Aspartate:oxygen oxidoreductase (deaminating)
R00401  alanine racemase
R00451  meso-2,6-diaminoheptanedioate carboxy-lyase (L-lysine-forming)
R00460  lysine racemase
R00491  aspartate racemase
R00567  arginine racemase
R00579  glutamine racemase
R00589  serine racemase
R00655  methionine racemase
R00672  ornithine racemase
R00686  L-Phenylalanine racemase (ATP-hydrolysing)
R00903  cysteine racemase
R01148  D-Alanine:2-oxoglutarate aminotransferase
R01150  D-alanine:D-alanine ligase (ADP-forming)
R01255  proline racemase
R01344  D-alanine:2-oxo acid aminotransferase
R01374  D-phenylalanine:quinone oxidoreductase (deaminating)
R01467  Threonine racemase
R01579  D-Glutamine amidohydrolase
R01582  D-Phenylalanine:2-oxoglutarate aminotransferase
R01583  D-glutamate hydro-lyase (cyclizing; 5-oxo-D-proline-forming)
R01874  D-cysteine sulfide-lyase (deaminating; pyruvate-forming)
R02280  1-pyrroline-4-hydroxy-2-carboxylate aminohydrolase (decyclizing)
R02457  D-Ornithine:oxygen oxidoreductase (deaminating)
R02458  D-Arginine amidinohydrolase
R02459  D-Ornithine:2-oxoglutarate aminotransferase
R02460  Bacitracin synthetase 2
R02461  D-ornithine 4,5-aminomutase
R02718  D-Alanine:poly(ribitol phosphate) ligase (AMP-forming)
R02735  LL-2,6-Diaminoheptanedioate 2-epimerase
R02783  UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase(ADP-forming)
R02825   
R02851  D-Lysine:2-oxocarboxylate aminotransferase
R02852  D-2,6-diaminohexanoic acid 5,6-aminomutase
R02854   
R02894  D-Proline:oxygen oxidoreductase
R02895   
R02923  D-Arginine:oxygen oxidoreductase (deaminating)
R02924  D-Arginine:2-oxoglutarate aminotransferase
R03001  D-Methionine:pyruvate aminotransferase
R03249   
R03250   
R03296  trans-4-Hydroxy-L-proline 2-epimerase
R03691  ATP:lombricine N-phosphotransferase
R03903  acetyl-CoA:D-amino-acid N-acetyltransferase
R04012  D-Glutamine:D-glutamyl-peptide 5-glutamyltransferase
R04200  D-threo-2,4-diaminopentanoate:NAD+ oxidoreductase (deaminating)
R04201  D-threo-2,4-diaminopentanoate:NADP+ oxidoreductase(deaminating)
R04221  cis-4-Hydroxy-D-proline:oxygen oxidoreductase (deaminating)
R04369  D-Alanine:alanyl-poly(glycerolphosphate) ligase (ADP-forming)
R04446   
R04447   
R04687  2,5-Diaminohexanoate:NAD+ oxidoreductase (deaminating)
R04688  2,5-Diaminohexanoate:NADP+ oxidoreductase (deaminating)
R08195  D-threonine acetaldehyde-lyase (glycine-forming)
R09496  D-proline:acceptor oxidoreductase
R11018  D-arginine:acceptor oxidoreductase (deaminating)
R11031  L-arginine:NAD+ oxidoreductase (deaminating)
R11032  L-arginine:NADP+ oxidoreductase (deaminating)
R11428  cis-4-hydroxy-D-proline:acceptor oxidoreductase
R12237  staphylopine:NADP+ oxidoreductase [(2S)-2-amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate]-forming
R12304  D-ornithine carboxy-lyase
R12305  D-lysine carboxy-lyase
R12313  histidine racemase
R12341  S-adenosyl-L-methionine:D-histidine N-[(3S)-3-amino-3-carboxypropyl]-transferase
Compound
C00022  Pyruvate
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00077  L-Ornithine
C00079  L-Phenylalanine
C00084  Acetaldehyde
C00097  L-Cysteine
C00133  D-Alanine
C00134  Putrescine
C00135  L-Histidine
C00148  L-Proline
C00166  Phenylpyruvate
C00188  L-Threonine
C00217  D-Glutamate
C00402  D-Aspartate
C00431  5-Aminopentanoate
C00433  2,5-Dioxopentanoate
C00515  D-Ornithine
C00666  LL-2,6-Diaminoheptanedioate
C00680  meso-2,6-Diaminoheptanedioate
C00692  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739  D-Lysine
C00740  D-Serine
C00763  D-Proline
C00792  D-Arginine
C00793  D-Cysteine
C00819  D-Glutamine
C00820  D-Threonine
C00855  D-Methionine
C00993  D-Alanyl-D-alanine
C01110  5-Amino-2-oxopentanoic acid
C01157  Hydroxyproline
C01180  4-Methylthio-2-oxobutanoic acid
C01667  Bacitracin
C01672  Cadaverine
C01726  D-Lombricine
C02237  5-Oxo-D-proline
C02265  D-Phenylalanine
C02855  N-Phospho-D-lombricine
C03239  6-Amino-2-oxohexanoate
C03341  2-Amino-4-oxopentanoic acid
C03440  cis-4-Hydroxy-D-proline
C03564  1-Pyrroline-2-carboxylate
C03771  5-Guanidino-2-oxopentanoate
C03933  5-D-Glutamyl-D-glutamyl-peptide
C03943  (2R,4S)-2,4-Diaminopentanoate
C04260  O-D-Alanyl-poly(ribitol phosphate)
C04282  1-Pyrroline-4-hydroxy-2-carboxylate
C04457  D-Alanyl-alanyl-poly(glycerolphosphate)
C05161  (2R,5S)-2,5-Diaminohexanoate
C05620  N-Acetyl-D-phenylalanine
C05825  2-Amino-5-oxohexanoate
C05939  Linatine
C05941  2-Oxo-4-hydroxy-5-aminovalerate
C05942  Pyrrole-2-carboxylate
C06419  D-Histidine
C22024  Staphylopine
C22025  (2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
Reference
  Authors
Miyamoto T, Homma H
  Title
D-Amino acid metabolism in bacteria.
  Journal
J Biochem 170:5-13 (2021)
DOI:10.1093/jb/mvab043
Reference
  Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
  Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
  Journal
Science 352:1105-9 (2016)
DOI:10.1126/science.aaf1018
Related
pathway
rn00010  Glycolysis / Gluconeogenesis
rn00020  Citrate cycle (TCA cycle)
rn00250  Alanine, aspartate and glutamate metabolism
rn00260  Glycine, serine and threonine metabolism
rn00270  Cysteine and methionine metabolism
rn00300  Lysine biosynthesis
rn00310  Lysine degradation
rn00330  Arginine and proline metabolism
rn00340  Histidine metabolism
rn00360  Phenylalanine metabolism
rn00550  Peptidoglycan biosynthesis
rn00620  Pyruvate metabolism
KO pathway
ko00470   
LinkDB

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