KEGG   PATHWAY: scb00270
Entry
scb00270                    Pathway                                
Name
Cysteine and methionine metabolism - Streptomyces scabiei
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
scb00270  Cysteine and methionine metabolism
scb00270

Module
scb_M00035  Methionine degradation [PATH:scb00270]
scb_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:scb00270]
Other DBs
GO: 0006534 0006555
Organism
Streptomyces scabiei [GN:scb]
Gene
SCAB_82971  putative lyase [KO:K01738] [EC:2.5.1.47]
SCAB_46251  cysA; putative cystathionine/methionine gamma-synthase/lyase [KO:K01758] [EC:4.4.1.1]
SCAB_54591  putative cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
SCAB_5301  putative cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
SCAB_19601  putative transferase [KO:K00547] [EC:2.1.1.10]
SCAB_73321  metH; putative methionine synthase [KO:K00548] [EC:2.1.1.13]
SCAB_75311  metK; S-adenosylmethionine synthetase [KO:K00789] [EC:2.5.1.6]
SCAB_42201  putative spermidine synthase [KO:K00797] [EC:2.5.1.16]
SCAB_28111  putative phosphorylase [KO:K01243] [EC:3.2.2.9]
SCAB_28171  putative phosphorylase [KO:K01243] [EC:3.2.2.9]
SCAB_73271  mtnK; 5-methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
SCAB_53071  putative methylthioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
SCAB_68041  conserved hypothetical protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
SCAB_12451  putative probable amidohydrolase [KO:K12960] [EC:3.5.4.31 3.5.4.28]
SCAB_73191  putative initiation factor subunit [KO:K08963] [EC:5.3.1.23]
SCAB_55271  putative translation initiation factor [KO:K08963] [EC:5.3.1.23]
SCAB_73201  putative aldolase [KO:K08964] [EC:4.2.1.109]
SCAB_73211  putative hydrolase [KO:K09880] [EC:3.1.3.77]
SCAB_73221  putative oxidoreductase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
SCAB_77941  putative cystathionine gamma-synthase [KO:K01761] [EC:4.4.1.11]
SCAB_33201  putative restriction/modification system DNA methylase [KO:K00558] [EC:2.1.1.37]
SCAB_57141  conserved hypothetical protein [KO:K00558] [EC:2.1.1.37]
SCAB_22551  putative modification methylase [KO:K00558] [EC:2.1.1.37]
SCAB_55181  sahH; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
SCAB_30061  conserved hypothetical protein [KO:K01505] [EC:3.5.99.7]
SCAB_70301  putative pyridoxal-phosphate-dependent hydrolase [KO:K01505] [EC:3.5.99.7]
SCAB_41651  lysC; putative aspartate kinase [KO:K00928] [EC:2.7.2.4]
SCAB_41641  asd1; putative aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
SCAB_59621  asd1; aspartate semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
SCAB_3841  putative homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
SCAB_28961  thrA; homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
SCAB_86761  metA; PROBABLE HOMOSERINE O-ACETYLTRANSFERASE META (HOMOSERINE O-TRANS-ACETYLASE) (HOMOSERINE TRANSACETYLASE) (HTA) [KO:K00641] [EC:2.3.1.31 2.3.1.46]
SCAB_34371  metB; cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
SCAB_86771  putative Cys/Met metabolism enzyme [KO:K01740] [EC:2.5.1.49]
SCAB_26941  putative branched-chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]
SCAB_74561  putative pyridoxal-phosphate-dependent transaminase [KO:K00826] [EC:2.6.1.42]
SCAB_11211  conserved hypothetical protein [KO:K01919] [EC:6.3.2.2]
SCAB_37271  aspC; aspartate aminotransferase [KO:K00812] [EC:2.6.1.1]
SCAB_49631  putative thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
SCAB_24151  putative thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
SCAB_35681  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SCAB_6841  sdaA; L-serine dehydratase 1 [KO:K01752] [EC:4.3.1.17]
SCAB_27501  sdaA; L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
SCAB_27051  serA; putative D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
SCAB_51101  putative phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
SCAB_89801  cysK2; POSSIBLE CYSTEINE SYNTHASE A CYSK2 (O-ACETYLSERINE SULFHYDRYLASE) (O-ACETYLSERINE (THIOL)-LYASE) (CSASE) [KO:K22847] [EC:2.8.5.1]
SCAB_81941  putative cysteine synthase [KO:K22847] [EC:2.8.5.1]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
scb00010  Glycolysis / Gluconeogenesis
scb00250  Alanine, aspartate and glutamate metabolism
scb00260  Glycine, serine and threonine metabolism
scb00290  Valine, leucine and isoleucine biosynthesis
scb00430  Taurine and hypotaurine metabolism
scb00480  Glutathione metabolism
scb00620  Pyruvate metabolism
scb00640  Propanoate metabolism
scb00770  Pantothenate and CoA biosynthesis
scb00900  Terpenoid backbone biosynthesis
scb00920  Sulfur metabolism
KO pathway
ko00270   
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