KEGG   PATHWAY: schu03030
Entry
schu03030                   Pathway                                
Name
DNA replication - Siniperca chuatsi (mandarin fish)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
schu03030  DNA replication
schu03030

Organism
Siniperca chuatsi (mandarin fish) [GN:schu]
Gene
122861748  pole2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
122863079  rnaseh1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
122863669  mcm3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
122864093  [KO:K10739]
122864267  rpa3; replication protein A 14 kDa subunit [KO:K10740]
122864268  [KO:K10740]
122864420  mcm2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
122866829  fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
122866846  pola1; DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
122869422  mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
122871256  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
122873556  rnaseh2a; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
122873720  pold4; DNA polymerase delta subunit 4 [KO:K03505]
122873869  rfc1; replication factor C subunit 1 isoform X1 [KO:K10754]
122876337  rfc5; replication factor C subunit 5 [KO:K10756]
122876470  pole; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
122876532  pcna; proliferating cell nuclear antigen [KO:K04802]
122876617  pold2; DNA polymerase delta subunit 2 [KO:K02328]
122877718  rfc4; replication factor C subunit 4 [KO:K10755]
122878011  pole4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
122878563  rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
122880247  rnaseh2c; ribonuclease H2 subunit C [KO:K10745]
122880267  pola2; DNA polymerase alpha subunit B [KO:K02321]
122880883  mcm7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
122881045  rpa2; replication protein A 32 kDa subunit isoform X1 [KO:K10739]
122882025  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
122882134  dna2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
122883616  prim1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
122884298  prim2; DNA primase large subunit [KO:K02685]
122885896  rnaseh2b; ribonuclease H2 subunit B isoform X1 [KO:K10744]
122886607  mcm6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
122886782  pold3; DNA polymerase delta subunit 3 [KO:K03504]
122887292  zgc:110269; probable flap endonuclease 1 homolog isoform X1 [KO:K04799] [EC:3.1.-.-]
122887374  mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
122887463  lig1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
122888370  [KO:K07466]
122888874  rfc3; replication factor C subunit 3 [KO:K10756]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

DBGET integrated database retrieval system