KEGG   PATHWAY: ssn00630
Entry
ssn00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Shigella sonnei Ss046
Class
Metabolism; Carbohydrate metabolism
Pathway map
ssn00630  Glyoxylate and dicarboxylate metabolism
ssn00630

Module
ssn_M00012  Glyoxylate cycle [PATH:ssn00630]
ssn_M00621  Glycine cleavage system [PATH:ssn00630]
Other DBs
GO: 0046487 0043648
Organism
Shigella sonnei Ss046 [GN:ssn]
Gene
SSON_0124  lpdA; lipoamide dehydrogenase (NADH) [KO:K00382] [EC:1.8.1.4]
SSON_0126  acnB; aconitate hydrase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SSON_0503  gip; glyoxylate-induced protein [KO:K01816] [EC:5.3.1.22]
SSON_0671  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SSON_1042  ycdW; putative dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
SSON_1298  eda; 2-keto-3-deoxygluconate 6-phosphate aldolase/2-keto-4-hydroxyglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SSON_1361  yeaU; putative tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
SSON_1426  katE; catalase [KO:K03781] [EC:1.11.1.6]
SSON_1864  acnA; aconitate hydrase 1 [KO:K27802]
SSON_1947  purU; formyltetrahydrofolate deformylase; for purT-dependent FGAR synthesis [KO:K01433] [EC:3.5.1.10]
SSON_2283  atoB; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
SSON_2464  [KO:K01577] [EC:4.1.1.8]
SSON_2465  [KO:K07749] [EC:2.8.3.16]
SSON_2634  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
SSON_2956  fucO; L-1,2-propanediol oxidoreductase [KO:K00048] [EC:1.1.1.77]
SSON_3004  yqeF; putative acyltransferase [KO:K00626] [EC:2.3.1.9]
SSON_3056  gcvP; glycine decarboxylase, P protein of glycine cleavage system [KO:K00281] [EC:1.4.4.2]
SSON_3057  gcvH; glycine cleavage system H protein [KO:K02437]
SSON_3058  gcvT; aminomethyltransferase of glycine cleavage system [KO:K00605] [EC:2.1.2.10]
SSON_3068  sbm; methylmalonyl-CoA mutase (MCM) [KO:K01847] [EC:5.4.99.2]
SSON_3198  ttdA; L-tartrate dehydratase, subunit A [KO:K03779] [EC:4.2.1.32]
SSON_3199  ttdB; L-tartrate dehydratase, subunit B [KO:K03780] [EC:4.2.1.32]
SSON_3279  yhaD; conserved hypothetical protein [KO:K00865] [EC:2.7.1.165]
SSON_3280  yhaE; putative dehydrogenase [KO:K00042] [EC:1.1.1.60]
SSON_3378  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SSON_3516  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
SSON_3835  yiaE; putative dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
SSON_4042  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
SSON_4061  fdoI; formate dehydrogenase, cytochrome B556 (FDO) subunit [KO:K00127]
SSON_4062  fdoH; formate dehydrogenase-O, iron-sulfur subunit [KO:K00124]
SSON_4063  fdoG; formate dehydrogenase-O, major subunit [KO:K00123] [EC:1.17.1.9]
SSON_4186  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
SSON_4187  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
SSON_4250  acs; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00049  L-Aspartate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C05840  Iminoaspartate
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C19838  D-erythro-3-Hydroxyaspartate
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ssn00010  Glycolysis / Gluconeogenesis
ssn00020  Citrate cycle (TCA cycle)
ssn00030  Pentose phosphate pathway
ssn00053  Ascorbate and aldarate metabolism
ssn00071  Fatty acid degradation
ssn00230  Purine metabolism
ssn00250  Alanine, aspartate and glutamate metabolism
ssn00260  Glycine, serine and threonine metabolism
ssn00270  Cysteine and methionine metabolism
ssn00620  Pyruvate metabolism
ssn00710  Carbon fixation by Calvin cycle
ssn00750  Vitamin B6 metabolism
ssn00910  Nitrogen metabolism
KO pathway
ko00630   

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