KEGG   PATHWAY: tfd00970
Entry
tfd00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Tachysurus fulvidraco (yellow catfish)
Class
Genetic Information Processing; Translation
Pathway map
tfd00970  Aminoacyl-tRNA biosynthesis
tfd00970

Organism
Tachysurus fulvidraco (yellow catfish) [GN:tfd]
Gene
113634120  dars2; aspartate--tRNA ligase, mitochondrial isoform X1 [KO:K01876] [EC:6.1.1.12]
113634237  nars1; asparagine--tRNA ligase, cytoplasmic [KO:K01893] [EC:6.1.1.22]
113634714  vars2; valine--tRNA ligase, mitochondrial [KO:K01873] [EC:6.1.1.9]
113636464  kars1; lysine--tRNA ligase isoform X2 [KO:K04567] [EC:6.1.1.6]
113636692  mtfmt; LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase, mitochondrial [KO:K00604] [EC:2.1.2.9]
113636699  cars1; cysteine--tRNA ligase, cytoplasmic isoform X1 [KO:K01883] [EC:6.1.1.16]
113636963  ears2; probable glutamate--tRNA ligase, mitochondrial isoform X1 [KO:K01885] [EC:6.1.1.17]
113637695  tars1; threonine--tRNA ligase 1, cytoplasmic isoform X1 [KO:K01868] [EC:6.1.1.3]
113637872  farsb; phenylalanine--tRNA ligase beta subunit [KO:K01890] [EC:6.1.1.20]
113637938  sars2; serine--tRNA ligase, mitochondrial [KO:K01875] [EC:6.1.1.11]
113638646  [KO:K02435] [EC:6.3.5.6 6.3.5.7]
113639140  yars2; tyrosine--tRNA ligase, mitochondrial [KO:K01866] [EC:6.1.1.1]
113639255  [KO:K02435] [EC:6.3.5.6 6.3.5.7]
113639699  farsa; phenylalanine--tRNA ligase alpha subunit [KO:K01889] [EC:6.1.1.20]
113641420  iars2; isoleucine--tRNA ligase, mitochondrial [KO:K01870] [EC:6.1.1.5]
113641427  qrsl1; glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial [KO:K02433] [EC:6.3.5.6 6.3.5.7]
113641920  sars1; serine--tRNA ligase, cytoplasmic isoform X1 [KO:K01875] [EC:6.1.1.11]
113642384  nars2; probable asparagine--tRNA ligase, mitochondrial isoform X1 [KO:K01893] [EC:6.1.1.22]
113643168  mars1; methionine--tRNA ligase, cytoplasmic isoform X1 [KO:K01874] [EC:6.1.1.10]
113643172  pars2; probable proline--tRNA ligase, mitochondrial [KO:K01881] [EC:6.1.1.15]
113643565  vars1; valine--tRNA ligase [KO:K01873] [EC:6.1.1.9]
113643617  tars2; threonine--tRNA ligase 1, cytoplasmic isoform X1 [KO:K01868] [EC:6.1.1.3]
113644406  fars2; phenylalanine--tRNA ligase, mitochondrial [KO:K01889] [EC:6.1.1.20]
113644762  lars2; probable leucine--tRNA ligase, mitochondrial isoform X2 [KO:K01869] [EC:6.1.1.4]
113647552  lars1b; leucine--tRNA ligase, cytoplasmic [KO:K01869] [EC:6.1.1.4]
113648844  cars2; probable cysteine--tRNA ligase, mitochondrial isoform X1 [KO:K01883] [EC:6.1.1.16]
113649931  gatb; glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial [KO:K02434] [EC:6.3.5.6 6.3.5.7]
113651122  wars1; tryptophan--tRNA ligase, cytoplasmic isoform X1 [KO:K01867] [EC:6.1.1.2]
113652182  [KO:K10837] [EC:2.7.1.164]
113652469  tars3; threonine--tRNA ligase 1, cytoplasmic isoform X1 [KO:K01868] [EC:6.1.1.3]
113652475  aars1; alanine--tRNA ligase, cytoplasmic isoform X2 [KO:K01872] [EC:6.1.1.7]
113653135  dars1; aspartate--tRNA ligase, cytoplasmic [KO:K22503] [EC:6.1.1.12]
113653909  rars1; arginine--tRNA ligase, cytoplasmic [KO:K01887] [EC:6.1.1.19]
113654171  wars2; tryptophan--tRNA ligase, mitochondrial [KO:K01867] [EC:6.1.1.2]
113654895  mars2; methionine--tRNA ligase, mitochondrial [KO:K01874] [EC:6.1.1.10]
113654897  hars; histidine--tRNA ligase isoform X1 [KO:K01892] [EC:6.1.1.21]
113655101  iars1; isoleucine--tRNA ligase, cytoplasmic [KO:K01870] [EC:6.1.1.5]
113655887  qars1; glutamine--tRNA ligase [KO:K01886] [EC:6.1.1.18]
113657078  aars2; alanine--tRNA ligase, mitochondrial isoform X1 [KO:K01872] [EC:6.1.1.7]
113657320  sepsecs; O-phosphoseryl-tRNA(Sec) selenium transferase [KO:K03341] [EC:2.9.1.2]
113659485  eprs1; bifunctional glutamate/proline--tRNA ligase [KO:K14163] [EC:6.1.1.17 6.1.1.15]
113660963  gars1; glycine--tRNA ligase [KO:K01880] [EC:6.1.1.14]
113661166  rars2; probable arginine--tRNA ligase, mitochondrial isoform X1 [KO:K01887] [EC:6.1.1.19]
113661672  yars1; tyrosine--tRNA ligase, cytoplasmic [KO:K01866] [EC:6.1.1.1]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
tfd00250  Alanine, aspartate and glutamate metabolism
tfd00260  Glycine, serine and threonine metabolism
tfd00270  Cysteine and methionine metabolism
tfd00290  Valine, leucine and isoleucine biosynthesis
tfd00330  Arginine and proline metabolism
tfd00340  Histidine metabolism
tfd00380  Tryptophan metabolism
tfd00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   

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