KEGG   PATHWAY: yli00510
Entry
yli00510                    Pathway                                
Name
N-Glycan biosynthesis - Yarrowia lipolytica
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
yli00510  N-Glycan biosynthesis
yli00510

Module
yli_M00072  N-glycosylation by oligosaccharyltransferase [PATH:yli00510]
yli_M00073  N-glycan precursor trimming [PATH:yli00510]
Other DBs
GO: 0006487
Organism
Yarrowia lipolytica [GN:yli]
Gene
2905848  YALI2_A00429g; Dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03849] [EC:2.4.1.265]
2906147  YALI2_A00284g; Dolichol-phosphate mannosyltransferase subunit 3 [KO:K09659]
2906680  YALI2_C00740g; Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase [KO:K03850] [EC:2.4.1.256]
2906941  YALI2_C00247g; Glucosidase 2 subunit alpha [KO:K05546] [EC:3.2.1.207]
2907364  YALI2_C00750g; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [KO:K01001] [EC:2.7.8.15]
2907461  YALI2_C00752g; Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt3 [KO:K07151] [EC:2.4.99.18]
2907489  YALI2_C00859g; UDP-N-acetylglucosamine transferase subunit ALG14 [KO:K07441] [EC:2.4.1.141]
2907632  YALI2_C00964g; Dolichol-phosphate mannose synthase subunit 2 [KO:K09658]
2907921  YALI2_E00904g; Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit SWP1 [KO:K12667]
2908295  YALI2_F00680g; Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [KO:K12666]
2908679  YALI2_F00297g; Putative mannosyl-oligosaccharide glucosidase [KO:K01228] [EC:3.2.1.106]
2909087  YALI2_C01162g; Putative Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase [KO:K03847] [EC:2.4.1.260]
2910495  YALI2_D00991g; Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit wbp1 [KO:K12670]
2910710  YALI2_D00942g; GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [KO:K03844] [EC:2.4.1.131]
2910724  YALI2_D00222g; Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3 [KO:K12669]
2910856  YALI2_D01002g; Dolichyl-phosphate beta-glucosyltransferase [KO:K00729] [EC:2.4.1.117]
2910867  YALI2_D00118g; Dolichol-phosphate mannosyltransferase subunit 1 [KO:K00721] [EC:2.4.1.83]
2911055  YALI2_D00724g; Palmitoyl-protein thioesterase-dolichyl pyrophosphate phosphatase fusion 1 [KO:K07252] [EC:3.6.1.43]
2911200  YALI2_D00424g; Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase [KO:K01230] [EC:3.2.1.113]
2911218  YALI2_D00340g; Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03848] [EC:2.4.1.267]
2911298  YALI2_D00353g; Mannosyl-oligosaccharide 1,2-alpha-mannosidase [KO:K23741]
2911738  YALI2_E01382g; Dolichol kinase [KO:K00902] [EC:2.7.1.108]
2911827  YALI2_F00408g; Alpha-1,3/1,6-mannosyltransferase ALG2 [KO:K03843] [EC:2.4.1.132 2.4.1.257]
2911871  YALI2_E00579g; Alpha-1,2-mannosyltransferase alg9 [KO:K03846] [EC:2.4.1.259 2.4.1.261]
2911943  YALI2_F00441g; UDP-N-acetylglucosamine transferase subunit ALG13 [KO:K07432] [EC:2.4.1.141]
2911951  YALI2_F00460g; Chitobiosyldiphosphodolichol beta-mannosyltransferase [KO:K03842] [EC:2.4.1.142]
2912133  YALI2_E01700g; Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase [KO:K03845] [EC:2.4.1.258]
2912457  YALI2_E00165g; Polyprenol reductase [KO:K12345] [EC:1.3.1.22 1.3.1.94]
2912497  YALI2_E00180g; Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit dad-1 [KO:K12668]
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
C22974  ditrans,polycis-Polyprenal
C22975  Dolichal
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003  
G00004  
G00005  
G00006  
G00007  
G00008  
G00009  
G00010  
G00011  
G00012  
G00013  
G00014  
G00015  
G00016  Core fucose
G00017  
G00018  DS 3
G00019  
G00020  
G00021  
G00022  
G00171  
G10526  
G10595  
G10596  
G10597  
G10598  
G10599  
G10694  
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
yli00051  Fructose and mannose metabolism
yli00511  Other glycan degradation
yli00513  Various types of N-glycan biosynthesis
yli00515  Mannose type O-glycan biosynthesis
yli00520  Amino sugar and nucleotide sugar metabolism
yli00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
yli00900  Terpenoid backbone biosynthesis
KO pathway
ko00510   

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