KEGG   PATHWAY: zof00730
Entry
zof00730                    Pathway                                
Name
Thiamine metabolism - Zingiber officinale (ginger)
Class
Metabolism; Metabolism of cofactors and vitamins
Pathway map
zof00730  Thiamine metabolism
zof00730

Module
zof_M00899  Thiamine salvage pathway, HMP/HET => TMP [PATH:zof00730]
Other DBs
GO: 0006772
Organism
Zingiber officinale (ginger) [GN:zof]
Gene
122020767  probable thiamine biosynthetic bifunctional enzyme, chloroplastic [KO:K14153] [EC:2.7.1.49 2.7.4.7 2.5.1.3]
122024293  thiamine biosynthetic bifunctional enzyme TH1, chloroplastic-like isoform X1 [KO:K14153] [EC:2.7.1.49 2.7.4.7 2.5.1.3]
122027475  cysteine desulfurase, mitochondrial-like [KO:K04487] [EC:2.8.1.7]
122029569  cysteine desulfurase, mitochondrial-like [KO:K04487] [EC:2.8.1.7]
122056369  1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic-like [KO:K01662] [EC:2.2.1.7]
121988496  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
121989456  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
122005842  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
122045132  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
122007218  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic isoform X1 [KO:K01662] [EC:2.2.1.7]
122007928  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
121979243  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
121979370  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic isoform X1 [KO:K01662] [EC:2.2.1.7]
121979372  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
121979373  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
121997372  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic isoform X1 [KO:K01662] [EC:2.2.1.7]
122051277  1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic-like [KO:K01662] [EC:2.2.1.7]
122051838  1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic-like [KO:K01662] [EC:2.2.1.7]
121984002  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic isoform X1 [KO:K01662] [EC:2.2.1.7]
121984003  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
121984004  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
121998401  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
121998402  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
122014226  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
122001545  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
122055809  1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic-like [KO:K01662] [EC:2.2.1.7]
122002966  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
122040603  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
122025718  thiamine thiazole synthase 2, chloroplastic-like [KO:K03146] [EC:2.4.2.60]
121967276  thiamine thiazole synthase 2, chloroplastic-like [KO:K03146] [EC:2.4.2.60]
122021558  thiamine thiazole synthase 2, chloroplastic-like [KO:K03146] [EC:2.4.2.60]
122052496  thiamine thiazole synthase 2, chloroplastic-like [KO:K03146] [EC:2.4.2.60]
121976580  hydroxyethylthiazole kinase-like [KO:K00878] [EC:2.7.1.50]
121971084  hydroxyethylthiazole kinase-like [KO:K00878] [EC:2.7.1.50]
121981426  cancer-related nucleoside-triphosphatase homolog [KO:K06928] [EC:3.6.1.15]
122009187  cancer-related nucleoside-triphosphatase homolog [KO:K06928] [EC:3.6.1.15]
122006623  small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial-like [KO:K06949] [EC:3.6.1.- 3.1.3.100]
122002370  small ribosomal subunit biogenesis GTPase RsgA 1, mitochondrial-like isoform X1 [KO:K06949] [EC:3.6.1.- 3.1.3.100]
122056395  bifunctional TH2 protein, mitochondrial-like isoform X1 [KO:K22911] [EC:3.1.3.100 3.5.99.-]
121977876  bifunctional TH2 protein, mitochondrial-like [KO:K22911] [EC:3.1.3.100 3.5.99.-]
121972850  bifunctional TH2 protein, mitochondrial-like [KO:K22911] [EC:3.1.3.100 3.5.99.-]
122025077  bifunctional TH2 protein, mitochondrial-like isoform X1 [KO:K22911] [EC:3.1.3.100 3.5.99.-]
122019494  thiamine pyrophosphokinase 1-like [KO:K00949] [EC:2.7.6.2]
122020848  thiamine pyrophosphokinase 1-like isoform X1 [KO:K00949] [EC:2.7.6.2]
122053129  thiamine pyrophosphokinase 1-like isoform X1 [KO:K00949] [EC:2.7.6.2]
122023805  thiamine pyrophosphokinase 1-like [KO:K00949] [EC:2.7.6.2]
122024531  thiamine pyrophosphokinase 1-like isoform X1 [KO:K00949] [EC:2.7.6.2]
121988375  adenylate kinase 5, chloroplastic-like isoform X1 [KO:K00939] [EC:2.7.4.3]
122005015  probable adenylate kinase 7, mitochondrial [KO:K00939] [EC:2.7.4.3]
122043113  probable adenylate kinase 6, chloroplastic [KO:K00939] [EC:2.7.4.3]
122045288  probable adenylate kinase 1, chloroplastic isoform X1 [KO:K00939] [EC:2.7.4.3]
121992196  adenylate kinase, chloroplastic-like [KO:K00939] [EC:2.7.4.3]
122047620  probable adenylate kinase 6, chloroplastic [KO:K00939] [EC:2.7.4.3]
121980278  adenylate kinase 4 [KO:K00939] [EC:2.7.4.3]
121996137  adenylate kinase, chloroplastic-like [KO:K00939] [EC:2.7.4.3]
122048988  adenylate kinase 4-like [KO:K00939] [EC:2.7.4.3]
122010402  probable adenylate kinase 1, chloroplastic [KO:K00939] [EC:2.7.4.3]
121967827  probable adenylate kinase 7, mitochondrial isoform X1 [KO:K00939] [EC:2.7.4.3]
121997281  adenylate kinase 5, chloroplastic-like [KO:K00939] [EC:2.7.4.3]
121984190  adenylate kinase 4-like [KO:K00939] [EC:2.7.4.3]
122021015  adenylate kinase 4-like [KO:K00939] [EC:2.7.4.3]
122000726  probable adenylate kinase 7, mitochondrial [KO:K00939] [EC:2.7.4.3]
122053048  probable adenylate kinase 7, mitochondrial isoform X1 [KO:K00939] [EC:2.7.4.3]
122016952  probable adenylate kinase 1, chloroplastic [KO:K00939] [EC:2.7.4.3]
122024665  adenylate kinase 4-like [KO:K00939] [EC:2.7.4.3]
122040762  probable adenylate kinase 1, chloroplastic [KO:K00939] [EC:2.7.4.3]
Compound
C00003  NAD+
C00018  Pyridoxal phosphate
C00022  Pyruvate
C00037  Glycine
C00068  Thiamin diphosphate
C00082  L-Tyrosine
C00097  L-Cysteine
C00118  D-Glyceraldehyde 3-phosphate
C00378  Thiamine
C01081  Thiamin monophosphate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C02892  Thiamine acetic acid
C03028  Thiamin triphosphate
C03373  Aminoimidazole ribotide
C04294  5-(2-Hydroxyethyl)-4-methylthiazole
C04327  4-Methyl-5-(2-phosphooxyethyl)thiazole
C04556  4-Amino-2-methyl-5-(phosphooxymethyl)pyrimidine
C04752  4-Amino-5-hydroxymethyl-2-methylpyrimidine diphosphate
C05856  Thiamine aldehyde
C11437  1-Deoxy-D-xylulose 5-phosphate
C15809  Iminoglycine
C15810  Sulfur-carrier protein
C15811  [Enzyme]-cysteine
C15812  [Enzyme]-S-sulfanylcysteine
C15813  Adenylyl-[sulfur-carrier protein]
C15814  Thiocarboxy-[sulfur-carrier protein]
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20246  2-[(2R,5Z)-2-Carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate
C20247  2-(2-Carboxy-4-methylthiazol-5-yl)ethyl phosphate
C20267  4-Amino-5-aminomethyl-2-methylpyrimidine
C20784  ADP-5-ethyl-4-methylthiazole-2-carboxylate
Reference
PMID:15614489
  Authors
Kawasaki Y, Onozuka M, Mizote T, Nosaka K.
  Title
Biosynthesis of hydroxymethylpyrimidine pyrophosphate in Saccharomyces cerevisiae.
  Journal
Curr Genet 47:156-62 (2005)
DOI:10.1007/s00294-004-0557-x
Reference
PMID:14567704
  Authors
Park JH, Dorrestein PC, Zhai H, Kinsland C, McLafferty FW, Begley TP.
  Title
Biosynthesis of the thiazole moiety of thiamin pyrophosphate (vitamin B1).
  Journal
Biochemistry 42:12430-8 (2003)
DOI:10.1021/bi034902z
Reference
PMID:22616866
  Authors
Begley TP, Ealick SE, McLafferty FW
  Title
Thiamin biosynthesis: still yielding fascinating biological chemistry.
  Journal
Biochem Soc Trans 40:555-60 (2012)
DOI:10.1042/BST20120084
Reference
PMID:12777485
  Authors
Wightman R, Meacock PA
  Title
The THI5 gene family of Saccharomyces cerevisiae: distribution of homologues among the hemiascomycetes and functional redundancy in the aerobic biosynthesis of thiamin from pyridoxine.
  Journal
Microbiology 149:1447-60 (2003)
DOI:10.1099/mic.0.26194-0
Reference
PMID:22031445
  Authors
Chatterjee A, Abeydeera ND, Bale S, Pai PJ, Dorrestein PC, Russell DH, Ealick SE, Begley TP
  Title
Saccharomyces cerevisiae THI4p is a suicide thiamine thiazole synthase.
  Journal
Nature 478:542-6 (2011)
DOI:10.1038/nature10503
Reference
PMID:19348578
  Authors
Jurgenson CT, Begley TP, Ealick SE
  Title
The structural and biochemical foundations of thiamin biosynthesis.
  Journal
Annu Rev Biochem 78:569-603 (2009)
DOI:10.1146/annurev.biochem.78.072407.102340
Related
pathway
zof00010  Glycolysis / Gluconeogenesis
zof00230  Purine metabolism
zof00260  Glycine, serine and threonine metabolism
zof00270  Cysteine and methionine metabolism
zof00400  Phenylalanine, tyrosine and tryptophan biosynthesis
zof00750  Vitamin B6 metabolism
KO pathway
ko00730   
LinkDB

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