SSDB Best Search Result

Entry:csem:103381478 (1820 a.a.)
Name:mediator of RNA polymerase II transcription subunit 1
KO:K15144 mediator of RNA polymerase II transcription subunit 1
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Search Result : 168 hits (reference genome only)

                 Entry                                       KO      len   SW-score  identity  overlap  
------------------------------------------------------------------ -------------------------------------
ola:101168992 mediator of RNA polymerase II transcripti K15144    1782     9412     0.796      1836    
dre:571519 mediator of RNA polymerase II transcription  K15144    1770     7801     0.689      1847    
gga:420004 mediator of RNA polymerase II transcription  K15144    1583     5644     0.567      1807    
cfa:480533 mediator of RNA polymerase II transcription  K15144    1583     5559     0.563      1804    
ocu:100354064 mediator of RNA polymerase II transcripti K15144    1580     5546     0.566      1805    
fca:101090305 mediator of RNA polymerase II transcripti K15144    1583     5536     0.560      1807    
ssc:100513621 mediator of RNA polymerase II transcripti K15144    1564     5524     0.565      1799    
mcc:697781 mediator of RNA polymerase II transcription  K15144    1582     5523     0.562      1815    
ecb:100054967 mediator of RNA polymerase II transcripti K15144    1581     5521     0.562      1812    
bta:520734 mediator of RNA polymerase II transcription  K15144    1575     5521     0.565      1809    
mdo:100016446 mediator complex subunit 1                K15144    1582     5520     0.558      1821    
hsa:5469 mediator complex subunit 1                     K15144    1581     5514     0.560      1804    
rno:497991 mediator of RNA polymerase II transcription  K15144    1582     5490     0.558      1813    
mmu:19014 mediator complex subunit 1                    K15144    1575     5462     0.558      1818    
xla:432291 mediator of RNA polymerase II transcription  K15144    1570     5255     0.537      1803    
xtr:100036710 mediator of RNA polymerase II transcripti K15144    1573     5232     0.534      1814    
ame:412422 mediator of RNA polymerase II transcription  K15144    1785     1418     0.264      1839    
tca:658743 mediator of RNA polymerase II transcription  K15144    1476     1244     0.269      1369    
aga:1280472 mediator of RNA polymerase II transcription           2153     1218     0.259      1845    
aag:5569131 mediator of RNA polymerase II transcription K15144    1745     1187     0.253      1890    
dme:Dmel_CG7162 mediator complex subunit 1, isoform A   K15144    1475     1120     0.250      1548    
bmor:101743196 mediator of RNA polymerase II transcript K15144    1573     1060     0.248      1735    
cre:CHLRE_16g654700v5 uncharacterized protein                     3003      911     0.271      1182    
tps:THAPSDRAFT_21581 predicted protein                            4505      885     0.243      1591    
lma:LMJF_35_0520 proteophosphoglycan ppg4                         7194      839     0.230      1259    
rcu:8285436 uncharacterized transmembrane protein DDB_G            936      697     0.356      548     
ddi:DDB_G0289901 hypothetical protein                             1143      678     0.248      962     
kla:KLLA0_E14543g uncharacterized protein                         1224      654     0.259      865     
mtr:25488447 glycine-rich cell wall structural protein             489      650     0.343      499     
mtu:Rv1450c PE-PGRS family protein PE_PGRS27                      1329      644     0.239      1112    
bps:BPSL0892a putative lipoprotein                                 528      642     0.308      545     
mtc:MT0607 PE_PGRS family protein                                 1306      628     0.240      921     
bma:BMA2255 lipoprotein, putative                                  512      624     0.297      495     
cal:CAALFM_C209130CA Iff6p                                        1085      611     0.241      1062    
aor:AO090038000432 unnamed protein product; predicted p           1378      610     0.273      1014    
mlo:mlr0585 hypothetical glycine-rich protein                     2147      596     0.226      913     
cel:CELE_ZK643.8 GRound-Like (grd related)                         774      587     0.308      595     
ncr:NCU06109 hypothetical protein                                 1338      575     0.258      957     
mgr:MGG_14712 hypothetical protein                                4732      573     0.225      1231    
btk:BT9727_4458 collagen-like protein                             1055      569     0.240      955     
sly:101244606 glycine-rich cell wall structural protein            642      564     0.284      570     
ath:AT3G28780 transmembrane protein, putative (DUF1216)            674      553     0.270      696     
vvi:100262584 glycine-rich cell wall structural protein            483      539     0.310      397     
vg:54981368 Synechococcus phage Bellamy; hypothetical p            663      538     0.276      717     
osa:4341701 uncharacterized protein                                518      528     0.326      445     
csv:101208989 protein RNA-directed DNA methylation 3 is           1689      525     0.266      756     
bce:BC4725 hypothetical Membrane Spanning Protein                 1309      515     0.229      1020    
gmx:102662611 glycine-rich cell wall structural protein            572      514     0.281      498     
zma:118473575 glycine-rich cell wall structural protein            454      503     0.272      412     
mdm:139190025 glycine-rich cell wall structural protein            497      499     0.293      403     
dra:DR_0458 hypothetical protein                                   839      499     0.231      795     
amd:AMED_4182 hypothetical protein                                1106      495     0.249      912     
msm:MSMEG_0868 hypothetical protein                               1274      486     0.213      983     
psb:Psyr_1608 ice-nucleation proteins octamer repeat pr           1348      486     0.247      939     
fgr:FGSG_08487 hypothetical protein                     K14297    1884      483     0.232      914     
vpa:VPA1357 hypothetical protein                                  1622      478     0.232      1129    
tbr:Tb927.7.6580 hypothetical protein                             1076      475     0.220      908     
sau:SA2447 ORFID:SA2447; hypothetical protein, similar            2271      474     0.211      1362    
bxe:Bxe_A0786 Putative lipoprotein                                 351      471     0.382      272     
sao:SAOUHSC_02990 hypothetical protein                            2271      471     0.210      1409    
cne:CNA05020 hypothetical protein                                 1641      470     0.237      917     
cit:127899790 uncharacterized protein LOC127899790                 334      467     0.337      329     
sco:SCO2669 hypothetical protein SC6D10.12                         604      463     0.264      571     
sme:SM_b21548 hypothetical protein                                2174      462     0.243      818     
ani:ANIA_05485 protein nup2                                       1383      455     0.245      912     
sgu:SGLAU_04225 hypothetical protein                              1000      452     0.226      1024    
ser:SERP2281 serine threonine rich antigen                        1870      452     0.203      1123    
pti:PHATRDRAFT_41599 hypothetical protein                          416      451     0.338      379     
spn:SP_1772 cell wall surface anchor family protein               4776      448     0.186      1121    
ksk:KSE_60430 hypothetical protein                                 767      447     0.248      787     
xcc:XCC0507 ice nucleation protein                                1333      435     0.223      887     
pfa:PF3D7_0201900 erythrocyte membrane protein 3                  2441      429     0.197      1119    
reh:H16_B0055 Glycine-rich protein                                 504      428     0.247      486     
afm:AFUA_4G11070 nucleoporin SONB                       K14297    1984      427     0.227      864     
cdf:CD630_33490 Exosporium glycoprotein BclA3                      661      422     0.233      532     
rso:RSc0443 probable glycin-rich signal peptide protein            426      412     0.262      390     
sma:SAVERM_2551 putative translation initiation factor  K02519    1046      407     0.272      515     
sgr:SGR_2070 hypothetical protein                                 1070      406     0.212      963     
pae:PA1874 hypothetical protein                         K20276    2468      404     0.221      1220    
spo:2541547 nucleoporin Nup98 and Nup96                 K14297    1807      403     0.228      841     
ban:BA_4978 collagen triple helix repeat domain protein            469      393     0.291      412     
npu:Npun_R0879 hypothetical protein                                691      389     0.258      508     
xfa:XF_0818 endo-1,4-beta-glucanase                     K01179     592      388     0.470      164     
mba:Mbar_A1864 conserved hypothetical protein                      656      381     0.303      412     
spr:spr1403 Hypothetical protein                                  2551      380     0.219      899     
sce:YMR047C FG-nucleoporin NUP116                       K14297    1113      377     0.210      1037    
aci:ACIAD1854 putative phage-related protein                       469      377     0.312      301     
yps:YPTB0880 putative adhesin; involved in the adherenc           2056      376     0.232      1026    
mab:MAB_4284c Hypothetical protein                                 687      375     0.233      660     
sct:SCAT_3765 protein of unknown function                          433      370     0.273      315     
nmr:Nmar_0682 Collagen triple helix repeat                         542      365     0.244      442     
lla:L73264 unknown protein                                        1063      363     0.251      430     
ddd:Dda3937_02943 type III secreted protein                        569      351     0.255      447     
acb:A1S_0745 hypothetical protein                                  873      344     0.244      689     
eba:ebA4680 hypothetical protein, INTERPRO suggestion:             452      342     0.227      437     
syn:slr1403 integrin alpha- and beta4- subunit domain h           3016      340     0.270      378     
lpl:lp_1303a cell surface SD repeat protein precursor,m           3378      336     0.189      1066    
ana:all2793 unknown protein                                        681      329     0.277      383     
rha:RHA1_ro11114 conserved hypothetical protein                    567      328     0.239      451     
pde:Pden_4338 PE-PGRS family protein                               603      327     0.205      546     
bja:bll7882 ORF_ID:bll7882; hypothetical protein                   987      326     0.286      346     
bpe:BP1660 autotransporter                                        1011      325     0.297      323     
rpa:TX73_008660 autotransporter-associated beta strand            1331      322     0.260      392     
gvi:glr1305 ORF_ID:glr1305; unknown protein                        540      320     0.252      500     
kpn:KPN_00994 putative cell surface SD repeat protein p           3944      317     0.194      1031    
xac:XAC3546 outer membrane protein                      K21449    2190      302     0.212      868     
efa:EF3314 cell wall surface anchor family protein                1744      301     0.198      1170    
lil:LB_216 lipoprotein                                             698      301     0.310      248     
cro:ROD_29391 putative fimbrial adhesin                 K15125    3838      298     0.214      868     
cgl:Cgl1812 Hypothetical membrane protein                         1488      295     0.226      625     
mca:MCA2928 hypothetical protein                                   253      294     0.319      232     
ypk:y0943 putative membrane protein                               1526      292     0.214      984     
atu:Atu3276 conserved hypothetical protein                        1341      292     0.226      943     
pma:Pro_0013 RNA-binding protein, RRM domain                       252      290     0.310      226     
cje:Cj0628 lipoprotein                                  K12689    1144      286     0.225      880     
ype:YPO3247 putative adhesin                                      1910      285     0.211      984     
rle:RL1067 hypothetical protein                                    216      283     0.281      217     
ppu:PP_0806 putative Surface adhesion protein           K20276    6310      283     0.210      1378    
eca:ECA2112 type III effector protein                              479      280     0.265      457     
enc:ECL_01016 large repetitive protein                  K20276    1747      278     0.206      1252    
eam:EAMY_2970 Nuclear pore complex protein Nup98-Nup96             388      277     0.262      389     
llm:llmg_1127 cell wall surface anchor family protein             1349      273     0.187      994     
yen:YE3226 putative adhesin                                       2065      269     0.209      928     
son:SO_0189 bifunctional autotransporter / adhesin cadh           2522      267     0.196      861     
bms:BRA1148 outer membrane autotransporter              K19231    3420      267     0.211      871     
bmf:BAB2_1107 Aminoacyl-tRNA synthetase, class I:ATP/GT K19231    3422      266     0.217      880     
tde:TDE_2694 conserved hypothetical protein                        740      262     0.361      158     
hma:rrnAC3448 unknown                                              410      261     0.284      257     
ecs:ECs_1228 phage tail fiber protein                              645      260     0.231      338     
ece:Z1483 putative tail fiber protein of bacteriophage             645      260     0.231      338     
bme:BMEII0148 extracellular serine protease             K19231    2554      259     0.208      872     
lpn:lpg2644 tail fiber protein                                     493      258     0.250      380     
smar:SM39_3936 hemolysin                                K11016    1608      256     0.207      672     
ctb:CTL0716 Translocated actin-recruiting phosphoprotei           1005      256     0.203      958     
rsp:RSP_4242 Hemolysin-type calcium-binding protein               1544      256     0.235      774     
gsu:GSU1154 surface repeat protein, putative                      4713      256     0.210      859     
sty:STY2875 large repetitive protein                    K20276    3624      253     0.189      1047    
sem:STMDT12_C27420 large repetitive protein             K20276    3824      252     0.189      1043    
blo:BL1443 hypothetical protein                                    322      249     0.327      150     
cau:Caur_0211 polymorphic outer membrane protein                   894      248     0.217      766     
apl:APL_0104 autotransporter adhesin                    K21449    3154      248     0.207      798     
xom:XOO0620 outer membrane protein                                 950      248     0.203      992     
avn:Avin_12280 hypothetical protein                               2716      246     0.209      1165    
ret:RHE_CH02572 hypothetical conserved protein                     317      245     0.258      306     
ctr:CT_413 outer membrane protein PmpB                            1751      245     0.190      1149    
seo:STM14_3078 AIDA autotransporter-like protein                  1989      240     0.207      564     
stm:STM2513 C-terminal region of AIDA-like protein                2039      240     0.207      564     
syf:Synpcc7942_1337 Integrins alpha chain                         1434      233     0.223      826     
nme:NMB1768 hemagglutinin/hemolysin-related protein     K15125    2514      232     0.201      983     
syc:syc0216_c hypothetical protein                                1436      230     0.223      826     
tpa:TP_0136 predicted coding region TP0136                         495      228     0.249      397     
bsu:BSU12880 mannosyltransferase YkcB                              716      224     0.343      143     
fnu:FN1449 Fusobacterium outer membrane protein family            3165      211     0.255      478     
cpn:CPn_0540 polymorphic membrane protein B Family                1723      210     0.239      644     
ag:BAA12093 xanthomonalisin                             K05999     827      208     0.224      478     
fps:FP0006 Protein of unknown function precursor; putat            826      207     0.224      362     
hpj:jhp_0945 putative                                              668      199     0.250      256     
ccr:CC_1465 regulatory protein FlaEY                               954      199     0.206      790     
dvu:DVU_1012 hemolysin-type calcium-binding repeat prot           3038      197     0.214      725     
sfl:CP0182 hypothetical protein                         K12679    1102      195     0.220      472     
ngo:NGO_1122 hypothetical protein                                   91      191     0.462      65      
lin:lin0177 similar to 5'-nucleotidase, putative peptid            785      189     0.169      744     
bth:BT_3778 conserved hypothetical protein                         314      188     0.330      176     
tel:tlr1645 ORF_ID:tlr1645; hypothetical protein                  1422      183     0.207      692     
bfr:BF1742 chaperone protein DnaJ                       K03686     394      175     0.371      116     
smu:SMU_739c hypothetical protein                                  518      173     0.213      478     
cte:CT1790 conserved hypothetical protein               K06872     269      156     0.540      50      
cbo:CBO0464 putative membrane protein                   K06872     286      154     0.490      49      

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