KEGG   PATHWAY: ccri03018
Entry
ccri03018                   Pathway                                
Name
RNA degradation - Cariama cristata (Red-legged seriema)
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ccri03018  RNA degradation
ccri03018

Other DBs
GO: 0006401
Organism
Cariama cristata (Red-legged seriema) [GN:ccri]
Gene
104154502  PFKP; ATP-dependent 6-phosphofructokinase, platelet type [KO:K00850] [EC:2.7.1.11]
104154603  DIS3L; DIS3-like exonuclease 1 [KO:K18681] [EC:3.1.13.-]
104154826  PNLDC1; poly(A)-specific ribonuclease PARN-like domain-containing protein 1 [KO:K01148] [EC:3.1.13.4]
104155039  XRN1; 5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
104155068  EXOSC10; exosome component 10 [KO:K12591] [EC:3.1.13.-]
104155330  CNOT2; CCR4-NOT transcription complex subunit 2 [KO:K12605]
104155346  C1D; nuclear nucleic acid-binding protein C1D [KO:K12592]
104155406  HSPD1; 60 kDa heat shock protein, mitochondrial [KO:K04077] [EC:5.6.1.7]
104155781  EXOSC3; exosome complex component RRP40 [KO:K03681]
104156153  MPHOSPH6; M-phase phosphoprotein 6 [KO:K12593]
104157281  TTC37; tetratricopeptide repeat protein 37 [KO:K12600]
104157574  SKIV2L2; superkiller viralicidic activity 2-like 2 [KO:K12598] [EC:3.6.4.13]
104157719  CNOT8; CCR4-NOT transcription complex subunit 8 isoform X1 [KO:K12581]
104157888  DDX6; probable ATP-dependent RNA helicase DDX6 [KO:K12614] [EC:3.6.4.13]
104158662  DIS3; exosome complex exonuclease RRP44 [KO:K12585] [EC:3.1.13.-]
104158777  BTG1; protein BTG1 [KO:K14443]
104158860  EXOSC2; exosome complex component RRP4 [KO:K03679]
104159143  PABPC1; polyadenylate-binding protein 1 [KO:K13126]
104159169  EXOSC7; exosome complex component RRP42 [KO:K12589]
104159221  EXOSC1; exosome complex component CSL4 [KO:K07573]
104159613  LSM7; U6 snRNA-associated Sm-like protein LSm7 [KO:K12626]
104159702  LSM6; U6 snRNA-associated Sm-like protein LSm6 [KO:K12625]
104160171  PNPT1; polyribonucleotide nucleotidyltransferase 1, mitochondrial [KO:K00962] [EC:2.7.7.8]
104160808  PAN3; PAB-dependent poly(A)-specific ribonuclease subunit PAN3 isoform X1 [KO:K12572]
104160904  PAN2; LOW QUALITY PROTEIN: PAB-dependent poly(A)-specific ribonuclease subunit PAN2 [KO:K12571] [EC:3.1.13.4]
104161065  LSM3; U6 snRNA-associated Sm-like protein LSm3 [KO:K12622]
104161708  [KO:K12613] [EC:3.6.1.62]
104162163  EXOSC9; exosome complex component RRP45 [KO:K03678]
104162230  DHX36; ATP-dependent RNA helicase DHX36 [KO:K14442] [EC:3.6.4.13]
104162473  PABPC1L; LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like [KO:K13126]
104162651  EDC3; enhancer of mRNA-decapping protein 3 [KO:K12615]
104162765  HSPA9; stress-70 protein, mitochondrial [KO:K04043]
104163154  PARN; poly(A)-specific ribonuclease PARN [KO:K01148] [EC:3.1.13.4]
104163358  PAPD7; non-canonical poly(A) RNA polymerase PAPD7 isoform X1 [KO:K03514] [EC:2.7.7.19]
104163512  TOB1; protein Tob1 [KO:K14443]
104164408  PABPC4; polyadenylate-binding protein 4 [KO:K13126]
104164790  LSM5; U6 snRNA-associated Sm-like protein LSm5 [KO:K12624]
104164794  CNOT6L; CCR4-NOT transcription complex subunit 6-like isoform X1 [KO:K12603] [EC:3.1.13.4]
104164864  [KO:K01689] [EC:4.2.1.11]
104164876  EXOSC8; exosome complex component RRP43 [KO:K12586]
104165014  WDR61; WD repeat-containing protein 61 [KO:K12602]
104165164  CNOT10; CCR4-NOT transcription complex subunit 10 [KO:K12607]
104165528  XRN2; 5'-3' exoribonuclease 2 [KO:K12619] [EC:3.1.13.-]
104165596  ENO2; gamma-enolase isoform X1 [KO:K01689] [EC:4.2.1.11]
104166055  LSM4; U6 snRNA-associated Sm-like protein LSm4 [KO:K12623]
104166392  RQCD1; cell differentiation protein RCD1 homolog [KO:K12606]
104166419  [KO:K12625]
104166428  CNOT6; CCR4-NOT transcription complex subunit 6 [KO:K12603] [EC:3.1.13.4]
104166600  DCP1B; LOW QUALITY PROTEIN: mRNA-decapping enzyme 1B [KO:K12611] [EC:3.-.-.-]
104166843  BTG4; protein BTG4 [KO:K14443]
104167108  CNOT7; CCR4-NOT transcription complex subunit 7 [KO:K12581]
104167233  DCPS; m7GpppX diphosphatase [KO:K12584] [EC:3.6.1.59]
104167724  LSM8; LSM8 homolog, U6 small nuclear RNA associated [KO:K12627]
104167731  PAPD5; non-canonical poly(A) RNA polymerase PAPD5 [KO:K03514] [EC:2.7.7.19]
104167763  CNOT4; CCR4-NOT transcription complex subunit 4 isoform X1 [KO:K10643] [EC:2.3.2.27]
104168048  PATL1; LOW QUALITY PROTEIN: protein PAT1 homolog 1 [KO:K12617]
104168853  LSM1; U6 snRNA-associated Sm-like protein LSm1 [KO:K12620]
104169099  CNOT1; LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1 [KO:K12604]
104169396  BTG2; protein BTG2 [KO:K14443]
104169543  DCP1A; mRNA-decapping enzyme 1A [KO:K12610] [EC:3.-.-.-]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
ccri03015  mRNA surveillance pathway
KO pathway
ko03018   

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