KEGG   PATHWAY: clu03420
Entry
clu03420                    Pathway                                
Name
Nucleotide excision repair - Clavispora lusitaniae ATCC 42720
Description
Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
Class
Genetic Information Processing; Replication and repair
Pathway map
clu03420  Nucleotide excision repair
clu03420

Other DBs
GO: 0006289
Organism
Clavispora lusitaniae ATCC 42720 [GN:clu]
Gene
CLUG_00107  [KO:K03506] [EC:2.7.7.7]
CLUG_00333  [KO:K02326] [EC:2.7.7.7]
CLUG_00462  [KO:K10849]
CLUG_00558  [KO:K10740]
CLUG_00743  [KO:K02324] [EC:2.7.7.7]
CLUG_00744  [KO:K02324] [EC:2.7.7.7]
CLUG_00766  [KO:K02325] [EC:2.7.7.7]
CLUG_00788  [KO:K07466]
CLUG_00875  [KO:K03011]
CLUG_00998  [KO:K10847]
CLUG_01075  [KO:K10754]
CLUG_01172  [KO:K10756]
CLUG_01350  [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
CLUG_01803  [KO:K02328]
CLUG_01841  [KO:K02202] [EC:2.7.11.22 2.7.11.23]
CLUG_01852  [KO:K10846]
CLUG_01963  [KO:K03657] [EC:5.6.2.4]
CLUG_02050  [KO:K10841]
CLUG_02129  [KO:K04802]
CLUG_02148  [KO:K06634]
CLUG_02334  [KO:K10839]
CLUG_02405  [KO:K10570]
CLUG_02460  [KO:K03144]
CLUG_02606  [KO:K03012]
CLUG_03164  [KO:K03016]
CLUG_03181  [KO:K02327] [EC:2.7.7.7]
CLUG_03182  [KO:K02327] [EC:2.7.7.7]
CLUG_03276  [KO:K03142]
CLUG_03464  [KO:K10755]
CLUG_03468  [KO:K03006] [EC:2.7.7.6]
CLUG_03517  [KO:K10838]
CLUG_03627  [KO:K03015]
CLUG_03629  [KO:K03010] [EC:2.7.7.6]
CLUG_03733  [KO:K10609]
CLUG_04212  [KO:K03868] [EC:2.3.2.32]
CLUG_04376  [KO:K10756]
CLUG_04706  [KO:K03013]
CLUG_04754  [KO:K03009]
CLUG_04810  [KO:K10842]
CLUG_05036  [KO:K03141]
CLUG_05075  [KO:K10844] [EC:5.6.2.3]
CLUG_05076  [KO:K10844] [EC:5.6.2.3]
CLUG_05123  [KO:K10848] [EC:3.1.-.-]
CLUG_05175  [KO:K03014]
CLUG_05202  [KO:K10843] [EC:5.6.2.4]
CLUG_05545  [KO:K03504]
CLUG_05714  [KO:K10755]
CLUG_05739  [KO:K03143]
CLUG_05815  [KO:K03017]
CLUG_05823  [KO:K10739]
CLUG_05897  [KO:K10845]
Reference
  Authors
Sugasawa K.
  Title
[Molecular mechanism of mammalian nucleotide excision repair]
  Journal
Tanpakushitsu Kakusan Koso 46:893-901 (2001)
Reference
  Authors
Nakatsu Y.
  Title
[Transcription-coupled repair and Cockayne syndrome]
  Journal
Tanpakushitsu Kakusan Koso 46:908-15 (2001)
Reference
  Authors
Nakagawa N, Masui R, Kuramitsu S.
  Title
[Structure and function of DNA repair enzyme UvrB from Thermus thermophilus HB8]
  Journal
Tanpakushitsu Kakusan Koso 46:968-75 (2001)
Reference
  Authors
Kraemer KH, Patronas NJ, Schiffmann R, Brooks BP, Tamura D, DiGiovanna JJ.
  Title
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship.
  Journal
Neuroscience 145:1388-96 (2007)
DOI:10.1016/j.neuroscience.2006.12.020
Reference
  Authors
Saldivar JS, Wu X, Follen M, Gershenson D.
  Title
Nucleotide excision repair pathway review I: implications in ovarian cancer and platinum sensitivity.
  Journal
Gynecol Oncol 107:S56-71 (2007)
DOI:10.1016/j.ygyno.2007.07.043
Reference
  Authors
Sugasawa K.
  Title
[DNA repair pathways involving Cul4A ubiquitin ligases]
  Journal
Tanpakushitsu Kakusan Koso 51:1339-44 (2006)
Reference
  Authors
Ito S, Ando D, Tanaka K.
  Title
[Cross-talk between DNA repair and transcription: molecular mechanism and disorders]
  Journal
Tanpakushitsu Kakusan Koso 52:1823-31 (2007)
Related
pathway
clu03020  RNA polymerase
clu04120  Ubiquitin mediated proteolysis
KO pathway
ko03420   

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