KEGG   PATHWAY: cmk00240
Entry
cmk00240                    Pathway                                
Name
Pyrimidine metabolism - Callorhinchus milii (elephant shark)
Class
Metabolism; Nucleotide metabolism
Pathway map
cmk00240  Pyrimidine metabolism
cmk00240

Module
cmk_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:cmk00240]
cmk_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:cmk00240]
cmk_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:cmk00240]
cmk_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:cmk00240]
cmk_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:cmk00240]
Other DBs
GO: 0006220 0006213
Organism
Callorhinchus milii (elephant shark) [GN:cmk]
Gene
103185793  cad; CAD protein isoform X1 [KO:K11540] [EC:6.3.5.5 2.1.3.2 3.5.2.3]
103175984  dhodh; dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
103176424  umps; uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
103185264  cmpk; UMP-CMP kinase [KO:K13800] [EC:2.7.4.14]
103187110  cmpk2; UMP-CMP kinase 2, mitochondrial [KO:K13809] [EC:2.7.4.14]
103177441  nme7; nucleoside diphosphate kinase 7 isoform X1 [KO:K00940] [EC:2.7.4.6]
103178756  nme4; nucleoside diphosphate kinase, mitochondrial isoform X1 [KO:K00940] [EC:2.7.4.6]
103188966  nucleoside diphosphate kinase-like [KO:K00940] [EC:2.7.4.6]
103173752  nme6; nucleoside diphosphate kinase 6 [KO:K00940] [EC:2.7.4.6]
103186051  nme3; nucleoside diphosphate kinase 3 isoform X1 [KO:K00940] [EC:2.7.4.6]
103178249  ak9; adenylate kinase 9 [KO:K18533] [EC:2.7.4.3 2.7.4.6]
103181555  ectonucleoside triphosphate diphosphohydrolase 3 isoform X1 [KO:K01510] [EC:3.6.1.5]
103181556  ectonucleoside triphosphate diphosphohydrolase 3 isoform X1 [KO:K01510] [EC:3.6.1.5]
103181557  ectonucleoside triphosphate diphosphohydrolase 3 isoform X1 [KO:K01510] [EC:3.6.1.5]
103182999  ectonucleoside triphosphate diphosphohydrolase 8 [KO:K01510] [EC:3.6.1.5]
103183097  LOW QUALITY PROTEIN: ectonucleoside triphosphate diphosphohydrolase 8-like [KO:K01510] [EC:3.6.1.5]
103183098  ectonucleoside triphosphate diphosphohydrolase 8-like [KO:K01510] [EC:3.6.1.5]
103189973  entpd1; ectonucleoside triphosphate diphosphohydrolase 1 [KO:K01510] [EC:3.6.1.5]
103175547  cant1a; soluble calcium-activated nucleotidase 1 [KO:K12304] [EC:3.6.1.6]
103188915  ectonucleoside triphosphate diphosphohydrolase 4 isoform X1 [KO:K12305] [EC:3.6.1.6]
103191300  entpd4; ectonucleoside triphosphate diphosphohydrolase 4 isoform X1 [KO:K12305] [EC:3.6.1.6]
103179204  entpd6; ectonucleoside triphosphate diphosphohydrolase 6 [KO:K01511] [EC:3.6.1.6]
103186794  entpd5a; ectonucleoside triphosphate diphosphohydrolase 5 isoform X1 [KO:K01511] [EC:3.6.1.6]
103182285  venom phosphodiesterase 2 isoform X1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
103182286  ectonucleotide pyrophosphatase/phosphodiesterase family member 3 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
103177097  probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform X1 [KO:K25435] [EC:3.6.1.- 2.1.1.-]
103180986  nudt2; bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] [KO:K01518] [EC:3.6.1.17]
103177501  CTP synthase 2 isoform X1 [KO:K01937] [EC:6.3.4.2]
103179458  CTP synthase 1 isoform X1 [KO:K01937] [EC:6.3.4.2]
103190407  uridine-cytidine kinase-like 1 isoform X1 [KO:K00876] [EC:2.7.1.48]
103180030  uridine-cytidine kinase 2 isoform X1 [KO:K00876] [EC:2.7.1.48]
103183036  uck1; uridine-cytidine kinase 1 isoform X1 [KO:K00876] [EC:2.7.1.48]
103185798  si:ch211-243j20.2; uridine-cytidine kinase-like 1 isoform X1 [KO:K00876] [EC:2.7.1.48]
103172600  uridine-cytidine kinase 2-A [KO:K00876] [EC:2.7.1.48]
103177797  snake venom 5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
103174884  cytosolic 5'-nucleotidase 1A-like [KO:K01081] [EC:3.1.3.5]
103175656  5'(3')-deoxyribonucleotidase, mitochondrial [KO:K01081] [EC:3.1.3.5]
103187790  cytosolic purine 5'-nucleotidase isoform X1 [KO:K01081] [EC:3.1.3.5]
103179629  cytosolic 5'-nucleotidase 1A-like [KO:K01081] [EC:3.1.3.5]
103190706  cytosolic purine 5'-nucleotidase isoform X1 [KO:K01081] [EC:3.1.3.5]
103183152  cytosolic 5'-nucleotidase 1A-like [KO:K01081] [EC:3.1.3.5]
103183128  cytosolic 5'-nucleotidase 1A [KO:K01081] [EC:3.1.3.5]
103187091  5'(3')-deoxyribonucleotidase, mitochondrial [KO:K01081] [EC:3.1.3.5]
103179254  nt5e; 5'-nucleotidase [KO:K19970] [EC:3.1.3.5]
103176259  uridine phosphorylase 1 [KO:K00757] [EC:2.4.2.3]
103176401  upp2; uridine phosphorylase 2 isoform X1 [KO:K00757] [EC:2.4.2.3]
103181812  zgc:136858; pseudouridine-metabolizing bifunctional protein C1861.05 [KO:K16330] [EC:4.2.1.70 2.7.1.83]
103183412  nt5c3a; cytosolic 5'-nucleotidase 3 [KO:K24242] [EC:3.1.3.91]
103185752  cytosolic 5'-nucleotidase 3 [KO:K24242] [EC:3.1.3.91]
103190157  cytidine deaminase isoform X1 [KO:K01489] [EC:3.5.4.5]
103191328  rrm1; ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
103185624  rrm2; ribonucleoside-diphosphate reductase subunit M2 isoform X1 [KO:K10808] [EC:1.17.4.1]
103180951  ribonucleoside-diphosphate reductase subunit M2 [KO:K10808] [EC:1.17.4.1]
103182308  hddc2; HD domain-containing protein 2 isoform X1 [KO:K07023] [EC:3.1.3.89]
103186473  zgc:110540; deoxynucleoside kinase [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
103191301  deoxycytidine kinase 2 [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
103180208  dctd; deoxycytidylate deaminase [KO:K01493] [EC:3.5.4.12]
103174204  dtymk; thymidylate kinase isoform X1 [KO:K00943] [EC:2.7.4.9]
103171789  deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial-like [KO:K01520] [EC:3.6.1.23]
103173097  deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial [KO:K01520] [EC:3.6.1.23]
103190183  thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
103175560  tk1; thymidine kinase, cytosolic [KO:K00857] [EC:2.7.1.21]
103188043  tk2; thymidine kinase 2, mitochondrial isoform X1 [KO:K00857] [EC:2.7.1.21]
103183452  tyms; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
103174634  dihydropyrimidine dehydrogenase [NADP(+)] isoform X1 [KO:K00207] [EC:1.3.1.2]
103184943  dpys; dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
103183972  upb1; LOW QUALITY PROTEIN: beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
cmk00030  Pentose phosphate pathway
cmk00220  Arginine biosynthesis
cmk00250  Alanine, aspartate and glutamate metabolism
cmk00280  Valine, leucine and isoleucine degradation
cmk00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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