KEGG   PATHWAY: cmk00513
Entry
cmk00513                    Pathway                                
Name
Various types of N-glycan biosynthesis - Callorhinchus milii (elephant shark)
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
cmk00513  Various types of N-glycan biosynthesis
cmk00513

Other DBs
GO: 0006487
Organism
Callorhinchus milii (elephant shark) [GN:cmk]
Gene
103179571  alg13; putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 [KO:K07432] [EC:2.4.1.141]
103174640  alg14; UDP-N-acetylglucosamine transferase subunit ALG14 homolog [KO:K07441] [EC:2.4.1.141]
103178836  alg1; chitobiosyldiphosphodolichol beta-mannosyltransferase [KO:K03842] [EC:2.4.1.142]
103181173  alg2; alpha-1,3/1,6-mannosyltransferase ALG2 [KO:K03843] [EC:2.4.1.132 2.4.1.257]
103177168  alg11; GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase isoform X1 [KO:K03844] [EC:2.4.1.131]
103182887  alg3; dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase [KO:K03845] [EC:2.4.1.258]
103187683  alg9; alpha-1,2-mannosyltransferase ALG9 [KO:K03846] [EC:2.4.1.259 2.4.1.261]
103177032  alg12; dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase [KO:K03847] [EC:2.4.1.260]
103176264  stt3b; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [KO:K07151] [EC:2.4.99.18]
103180290  stt3a; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A [KO:K07151] [EC:2.4.99.18]
121852105  LOW QUALITY PROTEIN: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B-like [KO:K07151] [EC:2.4.99.18]
103176673  rpn1; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [KO:K12666]
103171923  rpn2; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 isoform X1 [KO:K12667]
103186440  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1-like [KO:K12668]
103186441  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1-like [KO:K12668]
103187645  ddost; dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [KO:K12670]
103178865  magnesium transporter protein 1 [KO:K19478]
103178227  tusc3; tumor suppressor candidate 3 [KO:K19478]
103175785  ostc; oligosaccharyltransferase complex subunit ostc [KO:K26501]
103174859  tmem258; transmembrane protein 258 [KO:K26502]
103180403  endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase isoform X1 [KO:K23741] [EC:3.2.1.209]
103179580  LOW QUALITY PROTEIN: mannosyl-oligosaccharide 1,2-alpha-mannosidase IA [KO:K01230] [EC:3.2.1.113]
103180170  man1a2; mannosyl-oligosaccharide 1,2-alpha-mannosidase IB [KO:K01230] [EC:3.2.1.113]
103182593  man1a1; mannosyl-oligosaccharide 1,2-alpha-mannosidase IA [KO:K01230] [EC:3.2.1.113]
103191271  mgat1b; alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase b [KO:K00726] [EC:2.4.1.101]
103188552  man2a2; LOW QUALITY PROTEIN: alpha-mannosidase 2x [KO:K01231] [EC:3.2.1.114]
103178412  man2a1; alpha-mannosidase 2 [KO:K01231] [EC:3.2.1.114]
103175354  mgat2; alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [KO:K00736] [EC:2.4.1.143]
103177928  alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [KO:K00736] [EC:2.4.1.143]
103186366  hexb; beta-hexosaminidase subunit beta precursor [KO:K12373] [EC:3.2.1.52]
103175217  alpha-(1,6)-fucosyltransferase [KO:K00717] [EC:2.4.1.68]
103175431  hexd; hexosaminidase D isoform X1 [KO:K14459] [EC:3.2.1.52]
103178676  zgc:113333; beta-N-acetylhexosaminidase [KO:K14459] [EC:3.2.1.52]
103175065  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C [KO:K13748] [EC:2.4.1.201 2.4.1.145]
103179072  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C [KO:K13748] [EC:2.4.1.201 2.4.1.145]
103185333  mgat4c; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C [KO:K13748] [EC:2.4.1.201 2.4.1.145]
121851967  LOW QUALITY PROTEIN: alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like [KO:K13748] [EC:2.4.1.201 2.4.1.145]
103177135  mgat4a; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A [KO:K00738] [EC:2.4.1.145]
103181292  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B isoform X1 [KO:K00738] [EC:2.4.1.145]
103188228  mgat4b; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B [KO:K00738] [EC:2.4.1.145]
103177647  b4galt1l; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
103181973  beta-1,4-galactosyltransferase 2 isoform X1 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
103182791  b4galt2; beta-1,4-galactosyltransferase 2 isoform X1 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
103184325  beta-1,4-galactosyltransferase 3-like isoform X1 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
103174609  st3gal3a; CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [KO:K00781] [EC:2.4.3.6]
103181837  b4galnt3b; beta-1,4-N-acetylgalactosaminyltransferase 3 [KO:K09656] [EC:2.4.1.244]
103186017  LOW QUALITY PROTEIN: N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 [KO:K09657] [EC:2.4.1.244]
103188101  carbohydrate sulfotransferase 8 isoform X3 [KO:K09672] [EC:2.8.2.-]
103179706  carbohydrate sulfotransferase 9 [KO:K09673] [EC:2.8.2.-]
Compound
G00011   
G00012   
G00013   
G00014   
G00015   
G00016  Core fucose
G00017   
G00179   
G01813   
G05477   
G10665   
G10694   
G10716   
G10770   
G10841   
G10920   
G11000   
G11040   
G11933   
G12617   
G12625   
G12626   
G13047   
G13048   
G13049   
G13050   
G13055   
G13056   
G13057   
G13058   
G13059   
Reference
PMID:11412862
  Authors
Munro S.
  Title
What can yeast tell us about N-linked glycosylation in the Golgi apparatus?
  Journal
FEBS Lett 498:223-7 (2001)
DOI:10.1016/S0014-5793(01)02488-7
Reference
PMID:9878803
  Authors
Dean N.
  Title
Asparagine-linked glycosylation in the yeast Golgi.
  Journal
Biochim Biophys Acta 1426:309-22 (1999)
DOI:10.1016/S0304-4165(98)00132-9
Reference
PMID:9878780
  Authors
Herscovics A.
  Title
Processing glycosidases of Saccharomyces cerevisiae.
  Journal
Biochim Biophys Acta 1426:275-85 (1999)
DOI:10.1016/S0304-4165(98)00129-9
Reference
PMID:9218445
  Authors
Wang XH, Nakayama K, Shimma Y, Tanaka A, Jigami Y.
  Title
MNN6, a member of the KRE2/MNT1 family, is the gene for mannosylphosphate transfer in Saccharomyces cerevisiae.
  Journal
J Biol Chem 272:18117-24 (1997)
DOI:10.1074/jbc.272.29.18117
Reference
PMID:9756928
  Authors
Rayner JC, Munro S.
  Title
Identification of the MNN2 and MNN5 mannosyltransferases required for forming and extending the mannose branches of the outer chain mannans of Saccharomyces cerevisiae.
  Journal
J Biol Chem 273:26836-43 (1998)
DOI:10.1074/jbc.273.41.26836
Reference
PMID:10037752
  Authors
Jungmann J, Rayner JC, Munro S.
  Title
The Saccharomyces cerevisiae protein Mnn10p/Bed1p is a subunit of a Golgi mannosyltransferase complex.
  Journal
J Biol Chem 274:6579-85 (1999)
DOI:10.1074/jbc.274.10.6579
Reference
PMID:8253757
  Authors
Nakanishi-Shindo Y, Nakayama K, Tanaka A, Toda Y, Jigami Y.
  Title
Structure of the N-linked oligosaccharides that show the complete loss of alpha-1,6-polymannose outer chain from och1, och1 mnn1, and och1 mnn1 alg3 mutants of Saccharomyces cerevisiae.
  Journal
J Biol Chem 268:26338-45 (1993)
Reference
PMID:20233335
  Authors
Gomord V, Fitchette AC, Menu-Bouaouiche L, Saint-Jore-Dupas C, Plasson C, Michaud D, Faye L
  Title
Plant-specific glycosylation patterns in the context of therapeutic protein production.
  Journal
Plant Biotechnol J 8:564-87 (2010)
DOI:10.1111/j.1467-7652.2009.00497.x
Related
pathway
cmk00510  N-Glycan biosynthesis
KO pathway
ko00513   
LinkDB

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