KEGG   PATHWAY: ndk00630
Entry
ndk00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Nocardioides dokdonensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
ndk00630  Glyoxylate and dicarboxylate metabolism
ndk00630

Module
ndk_M00621  Glycine cleavage system [PATH:ndk00630]
ndk_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:ndk00630]
Other DBs
GO: 0046487 0043648
Organism
Nocardioides dokdonensis [GN:ndk]
Gene
I601_0182  accD5_1; putative propionyl-CoA carboxylase beta chain 5 [KO:K27094]
I601_0183  [KO:K27095]
I601_0193  accC; Biotin carboxylase [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
I601_0223  lpdC; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I601_0249  mutB_1; Methylmalonyl-CoA mutase large subunit [KO:K01847] [EC:5.4.99.2]
I601_0250  mutA; Methylmalonyl-CoA mutase small subunit [KO:K01847] [EC:5.4.99.2]
I601_0266  mdh_1; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I601_0593  fadA_1; Putative acyltransferase [KO:K00626] [EC:2.3.1.9]
I601_0597  fadA_2; Putative acyltransferase [KO:K00626] [EC:2.3.1.9]
I601_0654  [KO:K00626] [EC:2.3.1.9]
I601_0696  citA; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
I601_0974  mcl1; Malyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
I601_1116  fadA_3; Putative acyltransferase [KO:K00626] [EC:2.3.1.9]
I601_1183  bktB_2; Beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
I601_1185  pdhD_1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I601_1263  lysN_1; 2-aminoadipate transaminase [KO:K05825] [EC:2.6.1.-]
I601_1425  ttuC'; putative tartrate dehydrogenase/decarboxylase TtuC' [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
I601_1554  acsA; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
I601_1957  aarA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
I601_2361  fadA_4; 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
I601_2642  garK; Glycerate 2-kinase [KO:K00865] [EC:2.7.1.165]
I601_2790  glnA_1; putative glutamine synthetase 2 [KO:K01915] [EC:6.3.1.2]
I601_2869  glnA_2; Glutamine synthetase [KO:K01915] [EC:6.3.1.2]
I601_2882  pdhD_2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I601_2885  gcvT; Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
I601_2949  amdA; Acetamidase [KO:K01455] [EC:3.5.1.49]
I601_3242  gcvH; Glycine cleavage system H protein [KO:K02437]
I601_3247  gcvP; Glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
I601_3370  katA; Catalase [KO:K03781] [EC:1.11.1.6]
I601_3459  [KO:K00626] [EC:2.3.1.9]
I601_3532  fadI; 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
I601_3569  acnA; Aconitate hydratase [KO:K27802]
I601_3723  accD6; putative propionyl-CoA carboxylase beta chain 6 [KO:K18472] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
I601_3861  [KO:K00104] [EC:1.1.99.14]
I601_3890  [KO:K00626] [EC:2.3.1.9]
I601_3891  [KO:K05606] [EC:5.1.99.1]
I601_3918  mutB_2; Methylmalonyl-CoA mutase large subunit [KO:K14447] [EC:5.4.99.63]
I601_3950  kgd; Multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
I601_3991  fdnH; Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit [KO:K00124]
I601_3992  fdhA_2; Formate dehydrogenase subunit alpha precursor [KO:K00123] [EC:1.17.1.9]
I601_3993  fdhA_3; Formate dehydrogenase subunit alpha precursor [KO:K00123] [EC:1.17.1.9]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00049  L-Aspartate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C05840  Iminoaspartate
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C19838  D-erythro-3-Hydroxyaspartate
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ndk00010  Glycolysis / Gluconeogenesis
ndk00020  Citrate cycle (TCA cycle)
ndk00030  Pentose phosphate pathway
ndk00071  Fatty acid degradation
ndk00230  Purine metabolism
ndk00250  Alanine, aspartate and glutamate metabolism
ndk00260  Glycine, serine and threonine metabolism
ndk00270  Cysteine and methionine metabolism
ndk00620  Pyruvate metabolism
ndk00710  Carbon fixation by Calvin cycle
ndk00750  Vitamin B6 metabolism
ndk00910  Nitrogen metabolism
KO pathway
ko00630   

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