KEGG   PATHWAY: ogo03030
Entry
ogo03030                    Pathway                                
Name
DNA replication - Oncorhynchus gorbuscha (pink salmon)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
ogo03030  DNA replication
ogo03030

Organism
Oncorhynchus gorbuscha (pink salmon) [GN:ogo]
Gene
123995620  single-stranded DNA-binding protein, mitochondrial-like isoform X1 [KO:K03111]
124013788  single-stranded DNA-binding protein, mitochondrial-like [KO:K03111]
123990947  rnaseh1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
123995336  ribonuclease H1-like isoform X1 [KO:K03469] [EC:3.1.26.4]
124005678  replication protein A 70 kDa DNA-binding subunit-like isoform X1 [KO:K07466]
123992728  replication protein A 70 kDa DNA-binding subunit-like isoform X1 [KO:K07466]
124034195  proliferating cell nuclear antigen [KO:K04802]
124036453  proliferating cell nuclear antigen-like [KO:K04802]
124038435  dna2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
123990290  fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
124009384  zgc:110269; probable flap endonuclease 1 homolog isoform X1 [KO:K04799] [EC:3.1.-.-]
124009810  lig1; LOW QUALITY PROTEIN: DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
123991227  pola1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
123994158  pola2; DNA polymerase alpha subunit B [KO:K02321]
124045041  LOW QUALITY PROTEIN: DNA primase small subunit-like [KO:K02684] [EC:2.7.7.102]
124038397  prim2; DNA primase large subunit [KO:K02685]
124026226  DNA polymerase delta catalytic subunit-like [KO:K02327] [EC:2.7.7.7]
124028086  LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit-like [KO:K02327] [EC:2.7.7.7]
124036538  pold2; DNA polymerase delta subunit 2 [KO:K02328]
124030766  LOW QUALITY PROTEIN: DNA polymerase delta subunit 2-like [KO:K02328]
123993726  pold3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
124002035  pold4; LOW QUALITY PROTEIN: DNA polymerase delta subunit 4 [KO:K03505]
124036039  pole; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
124001745  pole2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
124047958  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
123998939  pole4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
124003459  DNA replication licensing factor mcm2-like [KO:K02540] [EC:5.6.2.3]
124025725  DNA replication licensing factor mcm2 [KO:K02540] [EC:5.6.2.3]
123996715  mcm3l; MCM3 minichromosome maintenance deficient 3 (S. cerevisiae), like isoform X1 [KO:K02541] [EC:5.6.2.3]
123991535  mcm3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
124041755  mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
124009115  DNA replication licensing factor mcm4-A isoform X1 [KO:K02212] [EC:5.6.2.3]
124000414  DNA replication licensing factor mcm5-like [KO:K02209] [EC:5.6.2.3]
124015491  DNA replication licensing factor mcm5-like [KO:K02209] [EC:5.6.2.3]
124009915  mcm6l; MCM6 minichromosome maintenance deficient 6, like [KO:K02542] [EC:5.6.2.3]
124009515  mcm6; LOW QUALITY PROTEIN: DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
123993567  mcm7; DNA replication licensing factor MCM7 [KO:K02210] [EC:5.6.2.3]
123997576  replication protein A 32 kDa subunit-like [KO:K10739]
124004844  rpa2; replication protein A 32 kDa subunit [KO:K10739]
124012654  replication protein A 14 kDa subunit-like [KO:K10740]
124043343  replication protein A 14 kDa subunit-like [KO:K10740]
124024854  rfc1; replication factor C subunit 1 isoform X1 [KO:K10754]
124027425  LOW QUALITY PROTEIN: replication factor C subunit 1-like [KO:K10754]
123996933  replication factor C subunit 4-like isoform X1 [KO:K10755]
124011721  rfc2; replication factor C subunit 2 isoform X1 [KO:K10755]
124037786  replication factor C subunit 4-like [KO:K10755]
123995226  rfc3; LOW QUALITY PROTEIN: replication factor C subunit 3 [KO:K10756]
124036588  replication factor C subunit 5-like [KO:K10756]
124016114  ribonuclease H2 subunit A-like [KO:K10743] [EC:3.1.26.4]
124016115  ribonuclease H2 subunit A-like [KO:K10743] [EC:3.1.26.4]
124042994  rnaseh2b; ribonuclease H2 subunit B isoform X1 [KO:K10744]
123993623  rnaseh2c; ribonuclease H2 subunit C [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

DBGET integrated database retrieval system