KEGG   PATHWAY: oor03250
Entry
oor03250                    Pathway                                
Name
Viral life cycle - HIV-1 - Orcinus orca (killer whale)
Class
Genetic Information Processing; Information processing in viruses
Pathway map
oor03250  Viral life cycle - HIV-1
oor03250

Organism
Orcinus orca (killer whale) [GN:oor]
Gene
101269477  CHMP6; charged multivesicular body protein 6 isoform X1 [KO:K12195]
101270133  MAP1B; microtubule-associated protein 1B isoform X1 [KO:K10429]
101270336  PPIA; peptidyl-prolyl cis-trans isomerase A isoform X1 [KO:K03767] [EC:5.2.1.8]
101270485  XPO1; exportin-1 isoform X1 [KO:K14290]
101270504  CXCR4; C-X-C chemokine receptor type 4 [KO:K04189]
101271029  SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1 [KO:K22544] [EC:3.1.5.-]
101271876  AFF4; AF4/FMR2 family member 4 isoform X1 [KO:K15185]
101271979  NELFA; negative elongation factor A isoform X2 [KO:K15179]
101272056  CHMP4A; charged multivesicular body protein 4a isoform X1 [KO:K12194]
101272265  NUP153; nuclear pore complex protein Nup153 isoform X1 [KO:K14296]
101272377  RGPD4; ranBP2-like and GRIP domain-containing protein 4 isoform X1 [KO:K12172] [EC:2.3.2.-]
101272438  BICD1; protein bicaudal D homolog 1 isoform X1 [KO:K18739]
101272818  CPSF7; cleavage and polyadenylation specificity factor subunit 7 isoform X1 [KO:K14398]
101272954  HGS; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182]
101273069  TSG101; tumor susceptibility gene 101 protein isoform X2 [KO:K12183]
101273219  FURIN; furin [KO:K01349] [EC:3.4.21.75]
101273474  PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 isoform X2 [KO:K09578] [EC:5.2.1.8]
101273482  [KO:K18750] [EC:3.5.4.-]
101273713  CCNT1; cyclin-T1 isoform X1 [KO:K15188]
101274459  PDCD6IP; programmed cell death 6-interacting protein isoform X2 [KO:K12200]
101274692  [KO:K03767] [EC:5.2.1.8]
101275019  SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1 [KO:K11648]
101275597  SUPT5H; transcription elongation factor SPT5 isoform X1 [KO:K15172]
101276257  TNPO3; transportin-3 isoform X1 [KO:K15436]
101276766  CHMP4B; charged multivesicular body protein 4b [KO:K12194]
101276783  ELL; RNA polymerase II elongation factor ELL isoform X4 [KO:K15183]
101277421  VPS4B; vacuolar protein sorting-associated protein 4B [KO:K12196]
101278716  [KO:K03767] [EC:5.2.1.8]
101278985  PSIP1; PC4 and SFRS1-interacting protein isoform X2 [KO:K25057]
101279017  KAT2A; histone acetyltransferase KAT2A isoform X4 [KO:K06062] [EC:2.3.1.48]
101279062  [KO:K03767] [EC:5.2.1.8]
101280566  CDK9; cyclin-dependent kinase 9 [KO:K02211] [EC:2.7.11.22 2.7.11.23]
101280805  [KO:K03767] [EC:5.2.1.8]
101280893  NELFE; negative elongation factor E isoform X2 [KO:K15182]
101281307  [KO:K03767] [EC:5.2.1.8]
101281487  [KO:K07936]
101281894  CREBBP; CREB-binding protein isoform X2 [KO:K04498] [EC:2.3.1.48]
101282220  MDFIC; myoD family inhibitor domain-containing protein [KO:K27688]
101282580  ELL3; RNA polymerase II elongation factor ELL3 [KO:K15183]
101282672  BST2; bone marrow stromal antigen 2 [KO:K06731]
101282697  [KO:K14754]
101282947  MX1; LOW QUALITY PROTEIN: interferon-induced GTP-binding protein Mx1 [KO:K14754]
101283104  RAN; GTP-binding nuclear protein Ran isoform X1 [KO:K07936]
101283661  KAT2B; histone acetyltransferase KAT2B isoform X3 [KO:K06062] [EC:2.3.1.48]
101284271  [KO:K15181]
101284415  MAP1A; microtubule-associated protein 1A isoform X1 [KO:K10429]
101284428  MAP1S; microtubule-associated protein 1S [KO:K10429]
101285114  CD4; T-cell surface glycoprotein CD4 [KO:K06454]
101285284  MLLT1; protein ENL isoform X2 [KO:K15187]
101285807  [KO:K03767] [EC:5.2.1.8]
101286083  BICD2; protein bicaudal D homolog 2 isoform X1 [KO:K18739]
101286748  CPSF6; cleavage and polyadenylation specificity factor subunit 6 isoform X4 [KO:K14398]
101287084  NELFCD; negative elongation factor C/D isoform X6 [KO:K15181]
101287751  EP300; histone acetyltransferase p300 [KO:K04498] [EC:2.3.1.48]
101287846  ELL2; RNA polymerase II elongation factor ELL2 isoform X1 [KO:K15183]
101288378  MLLT3; protein AF-9 isoform X1 [KO:K15187]
101288825  SERINC3; serine incorporator 3 isoform X1 [KO:K25661]
101289299  CCNT2; cyclin-T2 isoform X4 [KO:K15188]
101289322  SUPT4H1; transcription elongation factor SPT4 isoform X1 [KO:K15171]
101289648  VPS4A; vacuolar protein sorting-associated protein 4A isoform X3 [KO:K12196]
101289677  SERINC5; serine incorporator 5 isoform X1 [KO:K25655]
101290078  [KO:K03767] [EC:5.2.1.8]
101290240  FEZ1; fasciculation and elongation protein zeta-1 isoform X1 [KO:K25663]
105748501  [KO:K18750] [EC:3.5.4.-]
117198748  [KO:K12194]
Reference
PMID:27357278
  Authors
Li G, De Clercq E
  Title
HIV Genome-Wide Protein Associations: a Review of 30 Years of Research.
  Journal
Microbiol Mol Biol Rev 80:679-731 (2016)
DOI:10.1128/MMBR.00065-15
Reference
PMID:21284899
  Authors
Tagliamonte M, Tornesello ML, Buonaguro FM, Buonaguro L
  Title
Conformational HIV-1 envelope on particulate structures: a tool for chemokine coreceptor binding studies.
  Journal
J Transl Med 9 Suppl 1:S1 (2011)
DOI:10.1186/1479-5876-9-S1-S1
Reference
PMID:31028522
  Authors
Novikova M, Zhang Y, Freed EO, Peng K
  Title
Multiple Roles of HIV-1 Capsid during the Virus Replication Cycle.
  Journal
Virol Sin 34:119-134 (2019)
DOI:10.1007/s12250-019-00095-3
Reference
PMID:30286189
  Authors
Rawle DJ, Harrich D
  Title
Toward the "unravelling" of HIV: Host cell factors involved in HIV-1 core uncoating.
  Journal
PLoS Pathog 14:e1007270 (2018)
DOI:10.1371/journal.ppat.1007270
Reference
PMID:25036886
  Authors
Le Sage V, Mouland AJ, Valiente-Echeverria F
  Title
Roles of HIV-1 capsid in viral replication and immune evasion.
  Journal
Virus Res 193:116-29 (2014)
DOI:10.1016/j.virusres.2014.07.010
Reference
PMID:32429351
  Authors
Murphy RE, Saad JS
  Title
The Interplay between HIV-1 Gag Binding to the Plasma Membrane and Env Incorporation.
  Journal
Viruses 12:548 (2020)
DOI:10.3390/v12050548
Reference
PMID:21360054
  Authors
He N, Zhou Q
  Title
New insights into the control of HIV-1 transcription: when Tat meets the 7SK snRNP and super elongation complex (SEC).
  Journal
J Neuroimmune Pharmacol 6:260-8 (2011)
DOI:10.1007/s11481-011-9267-6
Reference
PMID:19865606
  Authors
Pincetic A, Leis J
  Title
The Mechanism of Budding of Retroviruses From Cell Membranes.
  Journal
Adv Virol 2009:6239691-6239699 (2009)
DOI:10.1155/2009/623969
Reference
PMID:32858867
  Authors
Kleinpeter AB, Freed EO
  Title
HIV-1 Maturation: Lessons Learned from Inhibitors.
  Journal
Viruses 12:940 (2020)
DOI:10.3390/v12090940
Reference
PMID:12944466
  Authors
Young TM, Wang Q, Pe'ery T, Mathews MB
  Title
The human I-mfa domain-containing protein, HIC, interacts with cyclin T1 and modulates P-TEFb-dependent transcription.
  Journal
Mol Cell Biol 23:6373-84 (2003)
DOI:10.1128/MCB.23.18.6373-6384.2003
Related
pathway
oor03013  Nucleocytoplasmic transport
oor04144  Endocytosis
KO pathway
ko03250   

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