KEGG   PATHWAY: osa03050
Entry
osa03050                    Pathway                                
Name
Proteasome - Oryza sativa japonica (Japanese rice)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
osa03050  Proteasome
osa03050

Other DBs
GO: 0000502
Organism
Oryza sativa japonica (Japanese rice) [GN:osa]
Gene
4346252  probable 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
4347735  probable 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
4347083  uncharacterized protein [KO:K06693]
4334802  OsRPN5; 26S proteasome non-ATPase regulatory subunit 12 homolog A [KO:K03035]
4335951  26S proteasome non-ATPase regulatory subunit 11 homolog [KO:K03036]
4336206  OsJ_15241; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
4329887  26S proteasome non-ATPase regulatory subunit 6-like [KO:K03037]
4337291  26S proteasome non-ATPase regulatory subunit 7 homolog A [KO:K03038]
4332055  26S proteasome non-ATPase regulatory subunit 13 homolog B [KO:K03039]
4324031  26S proteasome non-ATPase regulatory subunit 13 homolog B [KO:K03039]
4338586  26S proteasome non-ATPase regulatory subunit 14 homolog [KO:K03030]
4324379  OsRPN11; 26S proteasome non-ATPase regulatory subunit 14 homolog [KO:K03030]
4341987  26S proteasome non-ATPase regulatory subunit 14 homolog [KO:K03030]
4343069  26S proteasome non-ATPase regulatory subunit 8 homolog A [KO:K03031]
4325173  protein DELETION OF SUV3 SUPPRESSOR 1(I) [KO:K10881]
4327264  protein DELETION OF SUV3 SUPPRESSOR 1(I) [KO:K10881]
4332222  26S proteasome non-ATPase regulatory subunit 4 homolog [KO:K03029]
4348083  26S proteasome non-ATPase regulatory subunit 4 homolog [KO:K03029]
4328287  26S proteasome non-ATPase regulatory subunit 2 homolog A [KO:K03028]
4341960  26S proteasome non-ATPase regulatory subunit 2 homolog A isoform X1 [KO:K03028]
4346741  26S proteasome non-ATPase regulatory subunit 2 homolog A [KO:K03028]
4344971  26S proteasome non-ATPase regulatory subunit 1 homolog A [KO:K03032]
4336931  26S proteasome non-ATPase regulatory subunit 1 homolog A-like isoform X2 [KO:K03032]
4339809  26S proteasome regulatory subunit RPN13 [KO:K06691]
4340376  OsJ_20424; 26S proteasome regulatory subunit 7B [KO:K03061]
4330943  OsRPT1b; 26S proteasome regulatory subunit 7A [KO:K03061]
4344373  TBP2; 26S proteasome regulatory subunit 4 homolog [KO:K03062]
4332553  26S proteasome regulatory subunit 4 homolog [KO:K03062]
4328674  26S proteasome regulatory subunit 8 homolog A [KO:K03066]
4341448  P0457B11.5; 26S proteasome regulatory subunit 8 homolog A [KO:K03066]
4341487  26S proteasome regulatory subunit S10B homolog B [KO:K03064]
4328642  26S proteasome regulatory subunit S10B homolog B [KO:K03064]
4340276  26S proteasome regulatory subunit 6A homolog [KO:K03065]
4335380  26S proteasome regulatory subunit 6A homolog [KO:K03065]
4331050  OsRPT5a; 26S proteasome regulatory subunit 6A homolog [KO:K03065]
4329182  26S proteasome regulatory subunit 6B homolog [KO:K03063]
107276037  26S proteasome regulatory subunit 6B homolog [KO:K03063]
4340828  proteasome activator subunit 4 [KO:K06699]
4331828  OsJ_09653; proteasome subunit alpha type-6 [KO:K02730] [EC:3.4.25.1]
4343891  proteasome subunit alpha type-6 [KO:K02730] [EC:3.4.25.1]
4330075  proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
4333000  OsJ_11088; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
4340253  OsJ_20263; proteasome subunit alpha type-4-2 [KO:K02728] [EC:3.4.25.1]
4340285  PAC1A; proteasome subunit alpha type-4-1 [KO:K02728] [EC:3.4.25.1]
107278560  proteasome subunit alpha type-4-3 [KO:K02728] [EC:3.4.25.1]
4347710  OsPAD1; proteasome subunit alpha type-7-B [KO:K02731] [EC:3.4.25.1]
4346245  OsJ_00782; proteasome subunit alpha type-7-A [KO:K02731] [EC:3.4.25.1]
4350922  OsJ_34630; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
4328215  OsJ_05275; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
4339169  proteasome subunit alpha type-3-like [KO:K02727] [EC:3.4.25.1]
4327357  OsJ_03826; proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
4340065  proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
4330861  proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
4338009  OsPBB1; proteasome subunit beta type-7-A [KO:K02739] [EC:3.4.25.1]
4341637  OsJ_22127; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
4328517  proteasome subunit beta type-3-like [KO:K02735] [EC:3.4.25.1]
4333803  OsJ_12208; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
4340166  proteasome subunit beta type-5-A [KO:K02737] [EC:3.4.25.1]
4346117  proteasome subunit beta type-1-like [KO:K02732] [EC:3.4.25.1]
4347507  OsJ_29931; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
4347573  proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
4343535  probable proteasome inhibitor isoform X1 [KO:K06700]
4331035  cyclin-B1-2-like [KO:K11599]
4346694  cyclin-B1-2 [KO:K11599]
4333335  cyclin-B1-2 [KO:K11599]
136355193  cyclin-B1-2 isoform X1 [KO:K11599]
9266437  cyclin-B1-2 isoform X1 [KO:K11599]
107277711  cyclin-B1-2 isoform X1 [KO:K11599]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
osa04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   
LinkDB

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