KEGG   PATHWAY: achc04146
Entry
achc04146                   Pathway                                
Name
Peroxisome - Aquila chrysaetos chrysaetos (golden eagle)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
achc04146  Peroxisome
achc04146

Other DBs
GO: 0005777
Organism
Aquila chrysaetos chrysaetos (golden eagle) [GN:achc]
Gene
115333504  PEX16; peroxisomal biogenesis factor 16 [KO:K13335]
115345253  PEX3; peroxisomal biogenesis factor 3 [KO:K13336]
115345601  PEX19; peroxisomal biogenesis factor 19 isoform X1 [KO:K13337]
115348923  ABCD3; ATP-binding cassette sub-family D member 3 isoform X1 [KO:K05677] [EC:7.6.2.4]
115339812  PEX1; peroxisome biogenesis factor 1 isoform X1 [KO:K13338]
115350198  PEX6; peroxisome biogenesis factor 6 [KO:K13339]
115352747  PEX26; peroxisome assembly protein 26 [KO:K13340]
115344785  PEX7; peroxisomal biogenesis factor 7 isoform X1 [KO:K13341]
115343844  PEX5; peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
115346944  PEX5L; PEX5-related protein isoform X1 [KO:K13342]
115342706  PEX14; peroxisomal membrane protein PEX14 [KO:K13343]
115345089  PEX13; peroxisome biogenesis factor 13 isoform X1 [KO:K13344]
115346900  PEX12; peroxisome assembly protein 12 [KO:K13345]
115343223  PEX10; peroxisome biogenesis factor 10 [KO:K13346]
115340361  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
115349608  MPV17L2; mpv17-like protein 2 [KO:K13348]
115350978  MPV17; protein Mpv17 isoform X1 [KO:K13348]
115335769  MPV17L; mpv17-like protein [KO:K13349]
115338754  PXMP4; peroxisomal membrane protein 4 [KO:K13350]
115342033  PEX11A; peroxisomal membrane protein 11A isoform X1 [KO:K13351]
115345842  PEX11B; peroxisomal membrane protein 11B [KO:K13352]
115349410  PEX11G; peroxisomal membrane protein 11C isoform X2 [KO:K13353]
115352668  SLC25A17; peroxisomal membrane protein PMP34 [KO:K13354]
115339770  HACL1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
115336805  AMACR; alpha-methylacyl-CoA racemase isoform X1 [KO:K01796] [EC:5.1.99.4]
115341154  phytanoyl-CoA dioxygenase, peroxisomal isoform X1 [KO:K00477] [EC:1.14.11.18]
115342279  phytanoyl-CoA dioxygenase, peroxisomal-like [KO:K00477] [EC:1.14.11.18]
115345673  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 isoform X1 [KO:K00232] [EC:1.3.3.6]
115341218  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
115353747  ACOX2; peroxisomal acyl-coenzyme A oxidase 2 isoform X1 [KO:K10214] [EC:1.17.99.3]
115336530  HSD17B4; peroxisomal multifunctional enzyme type 2 isoform X1 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
115348992  SCP2; sterol carrier protein 2 isoform X1 [KO:K08764] [EC:2.3.1.176]
115352108  acyl-coenzyme A amino acid N-acyltransferase 2-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
115347400  EHHADH; peroxisomal bifunctional enzyme isoform X1 [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
115338845  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
115335725  DECR2; peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing] isoform X1 [KO:K13237] [EC:1.3.1.124]
115338172  delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial isoform X1 [KO:K12663] [EC:5.3.3.21]
115338167  delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like isoform X1 [KO:K12663] [EC:5.3.3.21]
115341556  ABCD2; ATP-binding cassette sub-family D member 2 isoform X1 [KO:K05676] [EC:7.6.2.4]
115348660  ABCD4; lysosomal cobalamin transporter ABCD4 isoform X1 [KO:K05678] [EC:7.6.2.8]
115337802  SLC27A5; bile acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
115342301  SLC27A2; very long-chain acyl-CoA synthetase isoform X1 [KO:K08746] [EC:6.2.1.- 6.2.1.3]
115346982  ACSL3; long-chain-fatty-acid--CoA ligase 3 isoform X1 [KO:K01897] [EC:6.2.1.3]
115333798  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
115334143  ACSL6; long-chain-fatty-acid--CoA ligase 6 isoform X1 [KO:K01897] [EC:6.2.1.3]
115341666  ACSL1; long-chain-fatty-acid--CoA ligase 1 [KO:K01897] [EC:6.2.1.3]
115348354  ACSL5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
115342645  PECR; LOW QUALITY PROTEIN: peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
115352972  ECI2; enoyl-CoA delta isomerase 2 isoform X1 [KO:K13239] [EC:5.3.3.8]
115346133  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
115336561  NUDT12; NAD-capped RNA hydrolase NUDT12 [KO:K03426] [EC:3.6.1.22]
115347920  NUDT13; NAD(P)H pyrophosphatase NUDT13, mitochondrial [KO:K03426] [EC:3.6.1.22]
115346117  NUDT19; nucleoside diphosphate-linked moiety X motif 19 isoform X1 [KO:K13355] [EC:3.6.1.77]
115339650  ACOT8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
115338426  LOW QUALITY PROTEIN: carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
115334787  CRAT; LOW QUALITY PROTEIN: carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
115339414  CROT; peroxisomal carnitine O-octanoyltransferase isoform X2 [KO:K05940] [EC:2.3.1.137]
115345953  MLYCD; malonyl-CoA decarboxylase, mitochondrial isoform X2 [KO:K01578] [EC:4.1.1.9]
115350404  GNPAT; LOW QUALITY PROTEIN: dihydroxyacetone phosphate acyltransferase [KO:K00649] [EC:2.3.1.42]
115342458  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal isoform X1 [KO:K00803] [EC:2.5.1.26]
115352014  FAR1; fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
115352611  FAR2; fatty acyl-CoA reductase 2 isoform X1 [KO:K13356] [EC:1.2.1.84]
115346256  MVK; mevalonate kinase isoform X1 [KO:K00869] [EC:2.7.1.36]
115345781  PMVK; phosphomevalonate kinase isoform X1 [KO:K13273] [EC:2.7.4.2]
115347729  AGXT; serine--pyruvate aminotransferase isoform X1 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
115346439  DAO; D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
115338158  DDO; D-aspartate oxidase isoform X1 [KO:K00272] [EC:1.4.3.1]
115343422  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
115341570  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
115348029  PAOX; peroxisomal N(1)-acetyl-spermine/spermidine oxidase isoform X3 [KO:K00308] [EC:1.5.3.13]
115346853  PIPOX; LOW QUALITY PROTEIN: peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
115351200  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform X1 [KO:K01640] [EC:4.1.3.4]
115351509  HMGCL; hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X1 [KO:K01640] [EC:4.1.3.4]
115344085  HAO2; hydroxyacid oxidase 2 isoform X2 [KO:K11517] [EC:1.1.3.15]
115345104  HAO1; hydroxyacid oxidase 1 isoform X1 [KO:K11517] [EC:1.1.3.15]
115351851  CAT; catalase [KO:K03781] [EC:1.11.1.6]
115344171  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
115344912  SOD2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
115346926  NOS2; nitric oxide synthase, inducible isoform X1 [KO:K13241] [EC:1.14.13.39]
115349656  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
115351280  EPHX2; bifunctional epoxide hydrolase 2 isoform X1 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
115343997  GSTK1; glutathione S-transferase kappa 1 [KO:K13299] [EC:2.5.1.18]
115350051  XDH; xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
achc00071  Fatty acid degradation
achc00120  Primary bile acid biosynthesis
achc00230  Purine metabolism
achc00564  Glycerophospholipid metabolism
achc00565  Ether lipid metabolism
achc00830  Retinol metabolism
achc00900  Terpenoid backbone biosynthesis
achc03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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