KEGG   PATHWAY: adu00900
Entry
adu00900                    Pathway                                
Name
Terpenoid backbone biosynthesis - Arachis duranensis
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
adu00900  Terpenoid backbone biosynthesis
adu00900

Module
adu_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:adu00900]
adu_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:adu00900]
adu_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:adu00900]
Other DBs
GO: 0009240 0016091
Organism
Arachis duranensis [GN:adu]
Gene
107464675  LOW QUALITY PROTEIN: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
107482707  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
107480979  LOW QUALITY PROTEIN: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
107463215  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
107459841  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
107464630  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [KO:K00099] [EC:1.1.1.267]
107491724  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [KO:K00099] [EC:1.1.1.267]
107465635  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic isoform X1 [KO:K00991] [EC:2.7.7.60]
107460357  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic [KO:K00919] [EC:2.7.1.148]
107488275  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [KO:K01770] [EC:4.6.1.12]
107476951  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [KO:K03526] [EC:1.17.7.1 1.17.7.3]
107461711  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [KO:K03526] [EC:1.17.7.1 1.17.7.3]
107476707  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [KO:K03527] [EC:1.17.7.4]
107466024  probable acetyl-CoA acetyltransferase, cytosolic 2 [KO:K00626] [EC:2.3.1.9]
107496137  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
107484423  LOW QUALITY PROTEIN: acetyl-CoA acetyltransferase FG05087, mitochondrial-like [KO:K00626] [EC:2.3.1.9]
107488456  hydroxymethylglutaryl-CoA synthase [KO:K01641] [EC:2.3.3.10]
107488093  hydroxymethylglutaryl-CoA synthase [KO:K01641] [EC:2.3.3.10]
107491223  hydroxymethylglutaryl-CoA synthase [KO:K01641] [EC:2.3.3.10]
107475678  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 [KO:K00021] [EC:1.1.1.34]
107487384  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [KO:K00021] [EC:1.1.1.34]
107496702  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [KO:K00021] [EC:1.1.1.34]
127743928  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like [KO:K00021] [EC:1.1.1.34]
107495366  mevalonate kinase isoform X1 [KO:K00869] [EC:2.7.1.36]
107465774  phosphomevalonate kinase, peroxisomal-like [KO:K00938] [EC:2.7.4.2]
107460490  phosphomevalonate kinase, peroxisomal [KO:K00938] [EC:2.7.4.2]
107467427  diphosphomevalonate decarboxylase MVD2, peroxisomal [KO:K01597] [EC:4.1.1.33]
107489266  isopentenyl phosphate kinase isoform X1 [KO:K06981] [EC:2.7.4.26]
107485966  isopentenyl-diphosphate Delta-isomerase I [KO:K01823] [EC:5.3.3.2]
107483040  farnesyl pyrophosphate synthase 1 isoform X1 [KO:K00787] [EC:2.5.1.1 2.5.1.10]
107469306  solanesyl diphosphate synthase 3, chloroplastic/mitochondrial [KO:K14066] [EC:2.5.1.1]
107460722  solanesyl-diphosphate synthase 1, mitochondrial-like [KO:K14066] [EC:2.5.1.1]
107474612  geranylgeranyl pyrophosphate synthase, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
107496376  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
107487886  geranylgeranyl pyrophosphate synthase, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
107459857  solanesyl diphosphate synthase 1, chloroplastic [KO:K05356] [EC:2.5.1.84 2.5.1.85]
107470426  dehydrodolichyl diphosphate synthase CPT3-like [KO:K11778] [EC:2.5.1.87]
107478761  dehydrodolichyl diphosphate synthase 6-like [KO:K11778] [EC:2.5.1.87]
107478935  uncharacterized protein LOC107478935 isoform X1 [KO:K11778] [EC:2.5.1.87]
107474352  dehydrodolichyl diphosphate synthase CPT3-like [KO:K11778] [EC:2.5.1.87]
107463109  dehydrodolichyl diphosphate synthase CPT3 [KO:K11778] [EC:2.5.1.87]
107458383  dehydrodolichyl diphosphate synthase 2 [KO:K11778] [EC:2.5.1.87]
107458552  dehydrodolichyl diphosphate synthase CPT3-like [KO:K11778] [EC:2.5.1.87]
107473616  dehydrodolichyl diphosphate synthase CPT3-like [KO:K11778] [EC:2.5.1.87]
107488700  dehydrodolichyl diphosphate synthase CPT3-like [KO:K11778] [EC:2.5.1.87]
110275658  dehydrodolichyl diphosphate synthase 6-like [KO:K11778] [EC:2.5.1.87]
127747583  dehydrodolichyl diphosphate synthase 6-like [KO:K11778] [EC:2.5.1.87]
107496713  geranylgeranyl diphosphate reductase, chloroplastic [KO:K10960] [EC:1.3.1.83 1.3.1.111]
107492652  geranylgeranyl diphosphate reductase, chloroplastic [KO:K10960] [EC:1.3.1.83 1.3.1.111]
107468034  geranylgeranyl diphosphate reductase, chloroplastic [KO:K10960] [EC:1.3.1.83 1.3.1.111]
107467723  isoprene synthase, chloroplastic [KO:K12742] [EC:4.2.3.27]
107472126  tricyclene synthase EBOS, chloroplastic [KO:K12742] [EC:4.2.3.27]
107477816  tricyclene synthase EBOS, chloroplastic [KO:K12742] [EC:4.2.3.27]
107462094  isoprene synthase, chloroplastic [KO:K12742] [EC:4.2.3.27]
107461928  isoprene synthase, chloroplastic [KO:K12742] [EC:4.2.3.27]
127744051  isoprene synthase, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
107461489  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [KO:K05955] [EC:2.5.1.58 2.5.1.59]
107462171  protein farnesyltransferase subunit beta [KO:K05954] [EC:2.5.1.58]
107490784  LOW QUALITY PROTEIN: protein farnesyltransferase subunit beta [KO:K05954] [EC:2.5.1.58]
107473883  CAAX prenyl protease 2 [KO:K08658] [EC:3.4.26.1]
107472760  CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
107472767  CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
107490573  protein-S-isoprenylcysteine O-methyltransferase B isoform X2 [KO:K00587] [EC:2.1.1.100]
107471445  isoprenylcysteine alpha-carbonyl methylesterase ICME [KO:K15889] [EC:3.1.1.-]
107476978  LOW QUALITY PROTEIN: isoprenylcysteine alpha-carbonyl methylesterase ICME-like [KO:K15889] [EC:3.1.1.-]
127748389  LOW QUALITY PROTEIN: isoprenylcysteine alpha-carbonyl methylesterase ICME-like [KO:K15889] [EC:3.1.1.-]
107463306  farnesylcysteine lyase [KO:K05906] [EC:1.8.3.5 1.8.3.6]
107460435  uncharacterized protein LOC107460435 [KO:K15891] [EC:1.1.1.354]
107473329  probable phytol kinase 3, chloroplastic [KO:K15892] [EC:2.7.1.216]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
adu00010  Glycolysis / Gluconeogenesis
adu00100  Steroid biosynthesis
adu00130  Ubiquinone and other terpenoid-quinone biosynthesis
adu00270  Cysteine and methionine metabolism
adu00510  N-Glycan biosynthesis
adu00902  Monoterpenoid biosynthesis
adu00904  Diterpenoid biosynthesis
adu00906  Carotenoid biosynthesis
adu00908  Zeatin biosynthesis
adu00909  Sesquiterpenoid and triterpenoid biosynthesis
KO pathway
ko00900   
LinkDB

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