KEGG   PATHWAY: ame04120
Entry
ame04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Apis mellifera (honey bee)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ame04120  Ubiquitin mediated proteolysis
ame04120

Other DBs
GO: 0016567
Organism
Apis mellifera (honey bee) [GN:ame]
Gene
412353  polyubiquitin-A isoform X2 [KO:K08770]
409675  polyubiquitin-A isoform X2 [KO:K08770]
725943  ubiquitin-60S ribosomal protein L40 [KO:K02927]
413884  ubiquitin-40S ribosomal protein S27a [KO:K02977]
410958  ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
410872  SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
409191  SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
409394  NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
551852  ubiquitin-conjugating enzyme E2-17 kDa isoform X1 [KO:K10573] [EC:2.3.2.23]
410992  ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
724793  ubiquitin-conjugating enzyme E2-17 kDa [KO:K06689] [EC:2.3.2.23]
412125  ubiquitin-conjugating enzyme E2-24 kDa isoform X1 [KO:K20217] [EC:2.3.2.23]
411077  NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
551971  Ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
552779  ubiquitin-conjugating enzyme E2 G2 isoform X2 [KO:K04555] [EC:2.3.2.23]
412330  ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
551283  SUMO-conjugating enzyme UBC9-B [KO:K10577]
409794  ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
413253  ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
726145  ubiquitin-conjugating enzyme E2-22 kDa isoform X1 [KO:K04649] [EC:2.3.2.23]
413822  ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
409225  NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
409386  ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
724799  (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O [KO:K10581] [EC:2.3.2.24]
412360  LOW QUALITY PROTEIN: transmembrane protein 231 [KO:K10582] [EC:2.3.2.23]
409607  ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
410838  ubiquitin-conjugating enzyme E2 R2 isoform X2 [KO:K02207] [EC:2.3.2.23]
408708  ubiquitin-conjugating enzyme E2 S isoform X4 [KO:K10583] [EC:2.3.2.23]
409100  ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
411115  baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
411182  ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
408749  ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
413096  ubiquitin-protein ligase E3C isoform X2 [KO:K10589] [EC:2.3.2.26]
412866  E3 ubiquitin-protein ligase SMURF2 isoform X2 [KO:K04678] [EC:2.3.2.26]
100576472  E3 ubiquitin-protein ligase Su(dx) [KO:K05633] [EC:2.3.2.26]
409382  E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
411723  E3 ubiquitin-protein ligase Nedd-4 isoform X1 [KO:K10591] [EC:2.3.2.26]
411961  E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
409099  E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
411536  E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
411750  probable E3 ubiquitin-protein ligase HERC4 isoform X2 [KO:K10615] [EC:2.3.2.26]
409564  ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
412219  ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
551229  E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
550966  RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
408750  pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
724690  RING finger protein 37 [KO:K10600]
411982  E3 ubiquitin-protein ligase CBL-B isoform X2 [KO:K04707] [EC:2.3.2.27]
412975  E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
410808  E3 ubiquitin-protein ligase Siah1 [KO:K04506] [EC:2.3.2.27]
551819  TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
408590  RING finger and CHY zinc finger domain-containing protein 1 isoform X2 [KO:K10144] [EC:2.3.2.27]
413374  putative inhibitor of apoptosis [KO:K16060]
726172  death-associated inhibitor of apoptosis 2 [KO:K16061]
726899  death-associated inhibitor of apoptosis 1 [KO:K16061]
551174  E3 SUMO-protein ligase PIAS3 isoform X2 [KO:K16063] [EC:2.3.2.-]
100576667  E3 ubiquitin-protein ligase synoviolin A isoform X1 [KO:K10601] [EC:2.3.2.27]
100576640  uncharacterized protein LOC100576640 isoform X2 [KO:K10605] [EC:2.3.2.27]
727490  E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
413376  E3 ubiquitin-protein ligase TRIM37 isoform X5 [KO:K10608] [EC:2.3.2.27]
408691  RING-box protein 1A isoform X1 [KO:K03868] [EC:2.3.2.32]
410565  cullin-1 [KO:K03347]
409234  S-phase kinase-associated protein 1 [KO:K03094]
551517  beta-TrCP isoform X2 [KO:K03362]
412031  S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
413081  F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
725467  cullin-2 isoform X1 [KO:K03870]
409140  elongin-C isoform X2 [KO:K03872]
551511  elongin-B [KO:K03873]
552700  cullin-3 [KO:K03869]
411679  kelch-like ECH-associated protein 1 [KO:K10456]
413034  rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
409279  cullin-4A [KO:K10609]
412593  DNA damage-binding protein 1 [KO:K10610]
551371  DET1 homolog [KO:K10571]
551563  cullin-5 isoform X2 [KO:K10612]
726378  anaphase-promoting complex subunit 11 [KO:K03358]
411942  anaphase-promoting complex subunit 2 [KO:K03349]
552186  cell division cycle protein 20 homolog isoform X2 [KO:K03363]
102654186  fizzy-related protein homolog [KO:K03364]
726912  protein cortex isoform X2 [KO:K03364]
726728  anaphase-promoting complex subunit 1 [KO:K03348]
409522  cell division cycle protein 27 homolog [KO:K03350]
409810  anaphase-promoting complex subunit 4 isoform X2 [KO:K03351]
410290  anaphase-promoting complex subunit 5 [KO:K03352]
550920  cell division cycle protein 16 homolog isoform X2 [KO:K03353]
412712  anaphase-promoting complex subunit 7 isoform X2 [KO:K03354]
413499  cell division cycle protein 23 homolog isoform X1 [KO:K03355]
413293  anaphase-promoting complex subunit 10 [KO:K03357]
726277  anaphase-promoting complex subunit CDC26 [KO:K03359]
102653956  anaphase-promoting complex subunit 13 [KO:K12456]
724920  anaphase-promoting complex subunit 15 [KO:K25228]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
ame03050  Proteasome
KO pathway
ko04120   
LinkDB

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