KEGG   PATHWAY: aof00900
Entry
aof00900                    Pathway                                
Name
Terpenoid backbone biosynthesis - Asparagus officinalis (garden asparagus)
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
aof00900  Terpenoid backbone biosynthesis
aof00900

Module
aof_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:aof00900]
aof_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:aof00900]
aof_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:aof00900]
Other DBs
GO: 0009240 0016091
Organism
Asparagus officinalis (garden asparagus) [GN:aof]
Gene
109828565  LOW QUALITY PROTEIN: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
109833845  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic isoform X1 [KO:K01662] [EC:2.2.1.7]
109849510  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
109847072  LOW QUALITY PROTEIN: 1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic-like [KO:K01662] [EC:2.2.1.7]
109828986  LOW QUALITY PROTEIN: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [KO:K00099] [EC:1.1.1.267]
109837943  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [KO:K00991] [EC:2.7.7.60]
109843730  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic [KO:K00919] [EC:2.7.1.148]
109827065  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [KO:K01770] [EC:4.6.1.12]
109847324  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [KO:K03526] [EC:1.17.7.1 1.17.7.3]
109819634  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [KO:K03527] [EC:1.17.7.4]
109824143  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
109844209  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
109825117  hydroxymethylglutaryl-CoA synthase-like [KO:K01641] [EC:2.3.3.10]
109838068  hydroxymethylglutaryl-CoA synthase-like [KO:K01641] [EC:2.3.3.10]
109842511  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like [KO:K00021] [EC:1.1.1.34]
109843683  LOW QUALITY PROTEIN: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like [KO:K00021] [EC:1.1.1.34]
109828000  mevalonate kinase-like [KO:K00869] [EC:2.7.1.36]
109820632  LOW QUALITY PROTEIN: mevalonate kinase-like [KO:K00869] [EC:2.7.1.36]
109850534  mevalonate kinase-like [KO:K00869] [EC:2.7.1.36]
109833436  phosphomevalonate kinase, peroxisomal-like isoform X1 [KO:K00938] [EC:2.7.4.2]
109825391  phosphomevalonate kinase, peroxisomal-like [KO:K00938] [EC:2.7.4.2]
109825759  diphosphomevalonate decarboxylase MVD1, peroxisomal-like [KO:K01597] [EC:4.1.1.33]
109836755  LOW QUALITY PROTEIN: diphosphomevalonate decarboxylase MVD2, peroxisomal-like [KO:K01597] [EC:4.1.1.33]
109849095  uncharacterized protein LOC109849095 isoform X1 [KO:K06981] [EC:2.7.4.26]
109830468  isopentenyl-diphosphate Delta-isomerase I [KO:K01823] [EC:5.3.3.2]
109824699  isopentenyl-diphosphate Delta-isomerase I-like [KO:K01823] [EC:5.3.3.2]
109830730  farnesyl pyrophosphate synthase 1-like [KO:K00787] [EC:2.5.1.1 2.5.1.10]
109829566  farnesyl pyrophosphate synthase 1-like [KO:K00787] [EC:2.5.1.1 2.5.1.10]
109848402  farnesyl pyrophosphate synthase 1-like [KO:K00787] [EC:2.5.1.1 2.5.1.10]
109834282  solanesyl-diphosphate synthase 1, mitochondrial-like isoform X1 [KO:K14066] [EC:2.5.1.1]
109836853  solanesyl-diphosphate synthase 1, mitochondrial-like isoform X1 [KO:K14066] [EC:2.5.1.1]
109851452  solanesyl-diphosphate synthase 1, mitochondrial-like isoform X1 [KO:K14066] [EC:2.5.1.1]
109821636  LOW QUALITY PROTEIN: geranylgeranyl pyrophosphate synthase, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
109842749  probable solanesyl-diphosphate synthase 3, chloroplastic [KO:K05356] [EC:2.5.1.84 2.5.1.85]
109840731  dehydrodolichyl diphosphate synthase 6-like [KO:K11778] [EC:2.5.1.87]
109828890  dehydrodolichyl diphosphate synthase 6-like [KO:K11778] [EC:2.5.1.87]
109829755  uncharacterized protein LOC109829755 [KO:K11778] [EC:2.5.1.87]
109830357  dehydrodolichyl diphosphate synthase 6-like [KO:K11778] [EC:2.5.1.87]
109820571  dehydrodolichyl diphosphate synthase complex subunit nus1-like isoform X1 [KO:K11778] [EC:2.5.1.87]
109843020  dehydrodolichyl diphosphate synthase complex subunit Nus1-like isoform X1 [KO:K11778] [EC:2.5.1.87]
109837250  dehydrodolichyl diphosphate synthase 6-like [KO:K11778] [EC:2.5.1.87]
109834138  LOW QUALITY PROTEIN: geranylgeranyl diphosphate reductase, chloroplastic-like [KO:K10960] [EC:1.3.1.83 1.3.1.111]
109830761  bifunctional levopimaradiene synthase, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
109833317  terpene synthase 10-like isoform X1 [KO:K12742] [EC:4.2.3.27]
109833319  (-)-alpha-terpineol synthase-like [KO:K12742] [EC:4.2.3.27]
109828583  (-)-alpha-terpineol synthase-like [KO:K12742] [EC:4.2.3.27]
109837606  LOW QUALITY PROTEIN: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [KO:K05955] [EC:2.5.1.58 2.5.1.59]
109837776  protein farnesyltransferase subunit beta [KO:K05954] [EC:2.5.1.58]
109823816  CAAX prenyl protease 2 isoform X1 [KO:K08658] [EC:3.4.26.1]
109835377  CAAX prenyl protease 2-like [KO:K08658] [EC:3.4.26.1]
109837845  CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
109840164  protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [KO:K00587] [EC:2.1.1.100]
109840424  probable protein-S-isoprenylcysteine O-methyltransferase [KO:K00587] [EC:2.1.1.100]
109829020  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 [KO:K15889] [EC:3.1.1.-]
109826352  farnesylcysteine lyase [KO:K05906] [EC:1.8.3.5 1.8.3.6]
109848345  LOW QUALITY PROTEIN: uncharacterized protein LOC109848345 [KO:K15891] [EC:1.1.1.354]
109829993  probable phytol kinase 2, chloroplastic [KO:K15892] [EC:2.7.1.216]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
aof00010  Glycolysis / Gluconeogenesis
aof00100  Steroid biosynthesis
aof00130  Ubiquinone and other terpenoid-quinone biosynthesis
aof00270  Cysteine and methionine metabolism
aof00510  N-Glycan biosynthesis
aof00904  Diterpenoid biosynthesis
aof00906  Carotenoid biosynthesis
aof00908  Zeatin biosynthesis
aof00909  Sesquiterpenoid and triterpenoid biosynthesis
KO pathway
ko00900   
LinkDB

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