KEGG   PATHWAY: bter04120
Entry
bter04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Bombus terrestris (buff-tailed bumblebee)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
bter04120  Ubiquitin mediated proteolysis
bter04120

Other DBs
GO: 0016567
Organism
Bombus terrestris (buff-tailed bumblebee) [GN:bter]
Gene
105667029  ubiquitin [KO:K02927]
100643509  ubiquitin-60S ribosomal protein L40 [KO:K02927]
100644076  ubiquitin-40S ribosomal protein S27a [KO:K02977]
100642600  ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
100650356  SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
100646185  SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
100652110  NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
100649287  ubiquitin-conjugating enzyme E2-17 kDa isoform X1 [KO:K10573] [EC:2.3.2.23]
100649447  ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
100644959  ubiquitin-conjugating enzyme E2-17 kDa [KO:K06689] [EC:2.3.2.23]
100647680  LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
100646139  NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
100649873  ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
100644043  ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
100643356  ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
100648108  SUMO-conjugating enzyme UBC9-B [KO:K10577]
100651795  LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
100651743  ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
100646708  ubiquitin-conjugating enzyme E2-22 kDa isoform X1 [KO:K04649] [EC:2.3.2.23]
100651456  ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
100645787  NEDD8-conjugating enzyme Ubc12 isoform X1 [KO:K10579] [EC:2.3.2.34]
100647067  ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
100645522  LOW QUALITY PROTEIN: (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O [KO:K10581] [EC:2.3.2.24]
100649388  ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
100646102  ubiquitin-conjugating enzyme E2Q-like protein CG4502 [KO:K10582] [EC:2.3.2.23]
100652215  ubiquitin-conjugating enzyme E2 R2 isoform X1 [KO:K02207] [EC:2.3.2.23]
100645704  ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
100648710  ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
100648203  baculoviral IAP repeat-containing protein 6 isoform X2 [KO:K10586] [EC:2.3.2.23]
100650076  ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
100652031  ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
100650246  ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
100649221  E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
100642510  E3 ubiquitin-protein ligase Su(dx) [KO:K05633] [EC:2.3.2.26]
100650881  E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
100646768  E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
100651406  E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
100646190  E3 ubiquitin-protein ligase hyd isoform X2 [KO:K10593] [EC:2.3.2.26]
100642356  probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
100647900  ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
100649777  ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
100644803  E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
100647575  peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
100652153  pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
100646159  LOW QUALITY PROTEIN: RING finger protein 37 [KO:K10600]
100642596  E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K04707] [EC:2.3.2.27]
100649117  E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
100649684  E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
100647374  TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
100651326  RING finger and CHY zinc finger domain-containing protein 1 isoform X3 [KO:K10144] [EC:2.3.2.27]
100647366  baculoviral IAP repeat-containing protein 7 isoform X3 [KO:K16060]
100647488  death-associated inhibitor of apoptosis 1 [KO:K16061]
100650673  death-associated inhibitor of apoptosis 2 isoform X1 [KO:K16061]
105667019  death-associated inhibitor of apoptosis 1-like [KO:K16061]
100647685  death-associated inhibitor of apoptosis 2 isoform X1 [KO:K16061]
100652265  baculoviral IAP repeat-containing protein 7-B [KO:K16061]
100650762  E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K04706] [EC:2.3.2.-]
100651003  E3 ubiquitin-protein ligase synoviolin A [KO:K10601] [EC:2.3.2.27]
100649216  breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
100648110  E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
100645865  E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
100643234  RING-box protein 1A [KO:K03868] [EC:2.3.2.32]
100650301  cullin-1 [KO:K03347]
100651427  S-phase kinase-associated protein 1 [KO:K03094]
100647997  beta-TrCP isoform X1 [KO:K03362]
100650657  S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
100648093  F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
100651139  cullin-2 isoform X1 [KO:K03870]
100651545  elongin-C isoform X2 [KO:K03872]
100646464  elongin-B [KO:K03873]
100646034  von Hippel-Lindau disease tumor suppressor [KO:K03871]
100650571  cullin-3 [KO:K03869]
100644865  kelch-like ECH-associated protein 1 [KO:K10456]
100645778  rho-related BTB domain-containing protein 1 [KO:K07868]
100642213  cullin-4A isoform X1 [KO:K10609]
100650523  DNA damage-binding protein 1 [KO:K10610]
100649432  DET1 homolog [KO:K10571]
100643679  RING-box protein 2 [KO:K10611]
100650915  LOW QUALITY PROTEIN: cullin-5 [KO:K10612]
105665618  anaphase-promoting complex subunit 2 [KO:K03349]
100648309  cell division cycle protein 20 homolog [KO:K03363]
100649980  fizzy-related protein homolog [KO:K03364]
100652120  protein cortex [KO:K03364]
100643302  anaphase-promoting complex subunit 1 [KO:K03348]
100649419  cell division cycle protein 27 homolog [KO:K03350]
100649293  anaphase-promoting complex subunit 4 [KO:K03351]
100642251  anaphase-promoting complex subunit 5 [KO:K03352]
100644516  cell division cycle protein 16 homolog [KO:K03353]
100642432  anaphase-promoting complex subunit 7 [KO:K03354]
100647089  cell division cycle protein 23 homolog isoform X1 [KO:K03355]
100642984  anaphase-promoting complex subunit 10 [KO:K03357]
100643425  anaphase-promoting complex subunit CDC26 [KO:K03359]
100651872  anaphase-promoting complex subunit 15 [KO:K25228]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
bter03050  Proteasome
KO pathway
ko04120   
LinkDB

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