KEGG   PATHWAY: cata04146
Entry
cata04146                   Pathway                                
Name
Peroxisome - Cygnus atratus (black swan)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
cata04146  Peroxisome
cata04146

Other DBs
GO: 0005777
Organism
Cygnus atratus (black swan) [GN:cata]
Gene
118244339  PEX16; peroxisomal biogenesis factor 16 [KO:K13335]
118243846  PEX3; peroxisomal biogenesis factor 3 [KO:K13336]
118260498  PEX19; peroxisomal biogenesis factor 19 isoform X1 [KO:K13337]
118243281  ABCD3; ATP-binding cassette sub-family D member 3 [KO:K05677] [EC:7.6.2.4]
118247451  PEX1; peroxisomal ATPase PEX1 isoform X1 [KO:K13338]
118256232  PEX6; peroxisome biogenesis factor 6 [KO:K13339]
118250120  PEX26; peroxisome assembly protein 26 isoform X1 [KO:K13340]
118244084  PEX7; peroxisomal biogenesis factor 7 [KO:K13341]
118253175  PEX5L; PEX5-related protein isoform X1 [KO:K13342]
118247557  PEX5; peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
118253270  PEX14; peroxisomal membrane protein PEX14 [KO:K13343]
118251144  PEX13; peroxisome biogenesis factor 13 [KO:K13344]
118254092  PEX12; peroxisome assembly protein 12 isoform X1 [KO:K13345]
118253323  PEX10; peroxisome biogenesis factor 10 [KO:K13346]
118247906  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
118258751  MPV17L2; mpv17-like protein 2 [KO:K13348]
118259067  MPV17; protein Mpv17 isoform X1 [KO:K13348]
118249242  MPV17L; mpv17-like protein [KO:K13349]
118248740  PXMP4; peroxisomal membrane protein 4 [KO:K13350]
118251981  PEX11A; peroxisomal membrane protein 11A isoform X2 [KO:K13351]
118261577  LOW QUALITY PROTEIN: peroxisomal membrane protein 11B [KO:K13352]
118258729  PEX11G; peroxisomal membrane protein 11C [KO:K13353]
118250634  SLC25A17; peroxisomal membrane protein PMP34 [KO:K13354]
118252779  HACL1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
118256707  AMACR; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
118249502  PHYH; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
118253998  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
118248404  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 isoform X1 [KO:K00232] [EC:1.3.3.6]
118248178  ACOX2; peroxisomal acyl-coenzyme A oxidase 2 [KO:K10214] [EC:1.17.99.3]
118259303  HSD17B4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
118243523  SCP2; sterol carrier protein 2 isoform X2 [KO:K08764] [EC:2.3.1.176]
118244478  acyl-coenzyme A amino acid N-acyltransferase 2-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
118246948  EHHADH; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
118251745  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
118249330  DECR2; peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing] isoform X1 [KO:K13237] [EC:1.3.1.124]
118261461  ECH1; delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [KO:K12663] [EC:5.3.3.21]
118249389  ABCD2; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
118244655  ABCD4; lysosomal cobalamin transporter ABCD4 isoform X1 [KO:K05678] [EC:7.6.2.8]
118261482  long-chain fatty acid transport protein 2-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
118253474  ACSL1; long-chain-fatty-acid--CoA ligase 1 [KO:K01897] [EC:6.2.1.3]
118248696  ACSL5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
118254948  ACSL6; long-chain-fatty-acid--CoA ligase 6 isoform X2 [KO:K01897] [EC:6.2.1.3]
118247069  ACSL3; fatty acid CoA ligase Acsl3 [KO:K01897] [EC:6.2.1.3]
118245232  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
118259510  PECR; LOW QUALITY PROTEIN: peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
118254774  ECI2; enoyl-CoA delta isomerase 2 isoform X1 [KO:K13239] [EC:5.3.3.8]
118246514  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 isoform X2 [KO:K17879] [EC:3.6.1.77]
118260086  NUDT12; NAD-capped RNA hydrolase NUDT12 [KO:K03426] [EC:3.6.1.22]
118244112  NUDT13; NAD(P)H pyrophosphatase NUDT13, mitochondrial isoform X1 [KO:K03426] [EC:3.6.1.22]
118246568  NUDT19; acyl-coenzyme A diphosphatase NUDT19 isoform X2 [KO:K13355] [EC:3.6.1.77]
118258407  ACOT8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
118252121  CRAT; carnitine O-acetyltransferase isoform X1 [KO:K00624] [EC:2.3.1.7]
118247481  CROT; peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
118246449  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
118244167  GNPAT; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
118258308  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal isoform X1 [KO:K00803] [EC:2.5.1.26]
118249750  FAR1; LOW QUALITY PROTEIN: fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
118250150  FAR2; fatty acyl-CoA reductase 2 [KO:K13356] [EC:1.2.1.84]
118257625  MVK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
118258455  PMVK; phosphomevalonate kinase isoform X1 [KO:K13273] [EC:2.7.4.2]
118247070  AGXT; alanine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
118257616  DAO; D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
118257153  DDO; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
118259428  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
118257959  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
118245128  PAOX; peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
118255096  PIPOX; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
118255795  HMGCL; hydroxymethylglutaryl-CoA lyase, mitochondrial [KO:K01640] [EC:4.1.3.4]
118246159  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
118259817  HAO2; 2-Hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
118251128  HAO1; 2-Hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
118250728  CAT; catalase [KO:K03781] [EC:1.11.1.6]
118247648  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
118244141  SOD2; superoxide dismutase [Mn], mitochondrial isoform X1 [KO:K04564] [EC:1.15.1.1]
118255021  NOS2; nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
118243259  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
118259060  EPHX2; bifunctional epoxide hydrolase 2 isoform X2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
118247541  GSTK1; glutathione S-transferase kappa 1 isoform X1 [KO:K13299] [EC:2.5.1.18]
118254342  XDH; xanthine dehydrogenase/oxidase isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
cata00071  Fatty acid degradation
cata00120  Primary bile acid biosynthesis
cata00230  Purine metabolism
cata00564  Glycerophospholipid metabolism
cata00565  Ether lipid metabolism
cata00830  Retinol metabolism
cata00900  Terpenoid backbone biosynthesis
cata03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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