KEGG   PATHWAY: cimi04146
Entry
cimi04146                   Pathway                                
Name
Peroxisome - Cebus imitator (Panamanian white-faced capuchin)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
cimi04146  Peroxisome
cimi04146

Other DBs
GO: 0005777
Organism
Cebus imitator (Panamanian white-faced capuchin) [GN:cimi]
Gene
108304884  PEX16; peroxisomal biogenesis factor 16 isoform X1 [KO:K13335]
108305661  PEX3; peroxisomal biogenesis factor 3 [KO:K13336]
108286034  PEX19; peroxisomal biogenesis factor 19 isoform X1 [KO:K13337]
108295328  ATP-binding cassette sub-family D member 3 isoform X1 [KO:K05677] [EC:7.6.2.4]
108309883  PEX1; LOW QUALITY PROTEIN: peroxisome biogenesis factor 1 [KO:K13338]
108317107  PEX6; peroxisome biogenesis factor 6 [KO:K13339]
108294862  PEX26; peroxisome assembly protein 26 isoform X1 [KO:K13340]
108305711  PEX7; peroxisomal biogenesis factor 7 isoform X1 [KO:K13341]
108287745  PEX5L; PEX5-related protein isoform X1 [KO:K13342]
108295024  PEX5; peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
108286229  PEX14; peroxisomal membrane protein PEX14 isoform X1 [KO:K13343]
108315611  PEX13; peroxisome biogenesis factor 13 isoform X1 [KO:K13344]
108308422  PEX12; peroxisome assembly protein 12 [KO:K13345]
108313963  PEX10; peroxisome biogenesis factor 10 [KO:K13346]
108299540  PEX2; peroxisome biogenesis factor 2 isoform X1 [KO:K06664]
108292641  PXMP2; peroxisomal membrane protein 2 isoform X1 [KO:K13347]
108284542  MPV17L2; mpv17-like protein 2 [KO:K13348]
108315936  MPV17; protein Mpv17 isoform X3 [KO:K13348]
108307823  MPV17L; mpv17-like protein isoform X1 [KO:K13349]
108292951  PXMP4; peroxisomal membrane protein 4 [KO:K13350]
108295318  PEX11A; peroxisomal membrane protein 11A isoform X1 [KO:K13351]
108293669  PEX11B; peroxisomal membrane protein 11B [KO:K13352]
108283681  PEX11G; peroxisomal membrane protein 11C isoform X1 [KO:K13353]
108315242  SLC25A17; peroxisomal membrane protein PMP34 [KO:K13354]
108299907  HACL1; 2-hydroxyacyl-CoA lyase 1 isoform X1 [KO:K12261] [EC:4.1.2.63]
108317650  AMACR; alpha-methylacyl-CoA racemase isoform X1 [KO:K01796] [EC:5.1.99.4]
108309268  LOW QUALITY PROTEIN: phytanoyl-CoA dioxygenase, peroxisomal-like [KO:K00477] [EC:1.14.11.18]
108305268  PHYH; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
108309444  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
108311588  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 isoform X1 [KO:K00232] [EC:1.3.3.6]
108303497  ACOX2; peroxisomal acyl-coenzyme A oxidase 2 [KO:K10214] [EC:1.17.99.3]
108306790  HSD17B4; peroxisomal multifunctional enzyme type 2 isoform X1 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
108286513  SCP2; non-specific lipid-transfer protein isoform X1 [KO:K08764] [EC:2.3.1.176]
108303855  BAAT; bile acid-CoA:amino acid N-acyltransferase [KO:K00659] [EC:2.3.1.65 3.1.2.2]
108311091  EHHADH; peroxisomal bifunctional enzyme isoform X1 [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
108289111  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
108290857  DECR2; peroxisomal 2,4-dienoyl-CoA reductase [KO:K13237] [EC:1.3.1.124]
108287878  ECH1; delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [KO:K12663] [EC:5.3.3.21]
108294745  ABCD1; ATP-binding cassette sub-family D member 1 [KO:K05675] [EC:7.6.2.4]
108292114  ABCD2; ATP-binding cassette sub-family D member 2 isoform X1 [KO:K05676] [EC:7.6.2.4]
108304469  ABCD4; lysosomal cobalamin transporter ABCD4 isoform X1 [KO:K05678] [EC:7.6.2.8]
108315580  SLC27A2; very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
108288117  ACSL1; long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
108292695  ACSL5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
108304814  ACSL3; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
108316559  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X2 [KO:K01897] [EC:6.2.1.3]
108307186  ACSL6; long-chain-fatty-acid--CoA ligase 6 isoform X1 [KO:K01897] [EC:6.2.1.3]
108308883  PECR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
108293315  ECI2; enoyl-CoA delta isomerase 2 isoform X1 [KO:K13239] [EC:5.3.3.8]
108313435  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
108291419  NUDT12; peroxisomal NADH pyrophosphatase NUDT12 [KO:K03426] [EC:3.6.1.22]
108304009  NUDT13; nucleoside diphosphate-linked moiety X motif 13 [KO:K03426] [EC:3.6.1.22]
108286415  NUDT19; nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
108313038  ACOT8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
108283024  CRAT; carnitine O-acetyltransferase isoform X1 [KO:K00624] [EC:2.3.1.7]
108298403  CROT; peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
108314633  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
108302798  GNPAT; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
108307323  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal isoform X1 [KO:K00803] [EC:2.5.1.26]
108297686  FAR2; fatty acyl-CoA reductase 2 [KO:K13356] [EC:1.2.1.84]
108302240  FAR1; fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
108313323  MVK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
108292460  PMVK; phosphomevalonate kinase isoform X1 [KO:K13273] [EC:2.7.4.2]
108290781  AGXT; serine--pyruvate aminotransferase isoform X1 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
108313084  DAO; D-amino-acid oxidase isoform X1 [KO:K00273] [EC:1.4.3.3]
108281744  DDO; D-aspartate oxidase isoform X3 [KO:K00272] [EC:1.4.3.1]
108295219  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
108316722  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
108297208  PAOX; peroxisomal N(1)-acetyl-spermine/spermidine oxidase isoform X1 [KO:K00308] [EC:1.5.3.13]
108313670  PIPOX; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
108308650  HMGCL; LOW QUALITY PROTEIN: hydroxymethylglutaryl-CoA lyase, mitochondrial [KO:K01640] [EC:4.1.3.4]
108314158  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
108300969  HAO1; hydroxyacid oxidase 1 isoform X1 [KO:K11517] [EC:1.1.3.15]
108301105  HAO2; hydroxyacid oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
108305771  CAT; catalase [KO:K03781] [EC:1.11.1.6]
108310300  PRDX5; peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
108295126  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
108310971  SOD2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
108296912  NOS2; nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
108292570  peroxiredoxin-1-like [KO:K13279] [EC:1.11.1.24]
108296855  peroxiredoxin-1-like [KO:K13279] [EC:1.11.1.24]
108312753  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
108312475  EPHX2; bifunctional epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
108291114  GSTK1; glutathione S-transferase kappa 1 isoform X1 [KO:K13299] [EC:2.5.1.18]
108284957  XDH; xanthine dehydrogenase/oxidase isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
108315361  dehydrogenase/reductase SDR family member 4-like [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
cimi00071  Fatty acid degradation
cimi00120  Primary bile acid biosynthesis
cimi00230  Purine metabolism
cimi00564  Glycerophospholipid metabolism
cimi00565  Ether lipid metabolism
cimi00830  Retinol metabolism
cimi00900  Terpenoid backbone biosynthesis
cimi03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

DBGET integrated database retrieval system