KEGG   PATHWAY: clum00240
Entry
clum00240                   Pathway                                
Name
Pyrimidine metabolism - Cyclopterus lumpus (lumpfish)
Class
Metabolism; Nucleotide metabolism
Pathway map
clum00240  Pyrimidine metabolism
clum00240

Module
clum_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:clum00240]
clum_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:clum00240]
clum_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:clum00240]
clum_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:clum00240]
clum_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:clum00240]
Other DBs
GO: 0006220 0006213
Organism
Cyclopterus lumpus (lumpfish) [GN:clum]
Gene
117727228  cad; CAD protein [KO:K11540] [EC:6.3.5.5 2.1.3.2 3.5.2.3]
117728002  dhodh; dihydroorotate dehydrogenase (quinone), mitochondrial isoform X1 [KO:K00254] [EC:1.3.5.2]
117750955  umps; uridine 5'-monophosphate synthase isoform X1 [KO:K13421] [EC:2.4.2.10 4.1.1.23]
117746185  cmpk; UMP-CMP kinase [KO:K13800] [EC:2.7.4.14]
117725455  cmpk2; UMP-CMP kinase 2, mitochondrial [KO:K13809] [EC:2.7.4.14]
117748881  nucleoside diphosphate kinase B-like [KO:K00940] [EC:2.7.4.6]
117727418  nme6; nucleoside diphosphate kinase 6 [KO:K00940] [EC:2.7.4.6]
117729183  nme7; nucleoside diphosphate kinase 7 [KO:K00940] [EC:2.7.4.6]
117734669  nucleoside diphosphate kinase B-like [KO:K00940] [EC:2.7.4.6]
117735379  nme3; nucleoside diphosphate kinase 3 [KO:K00940] [EC:2.7.4.6]
117735430  nme4; nucleoside diphosphate kinase, mitochondrial [KO:K00940] [EC:2.7.4.6]
117727730  ak9; adenylate kinase 9 [KO:K18533] [EC:2.7.4.3 2.7.4.6]
117748513  entpd1; ectonucleoside triphosphate diphosphohydrolase 1 isoform X1 [KO:K01510] [EC:3.6.1.5]
117745770  ectonucleoside triphosphate diphosphohydrolase 3-like [KO:K01510] [EC:3.6.1.5]
117745817  entpd3; ectonucleoside triphosphate diphosphohydrolase 3 [KO:K01510] [EC:3.6.1.5]
117737271  soluble calcium-activated nucleotidase 1-like isoform X1 [KO:K12304] [EC:3.6.1.6]
117737323  soluble calcium-activated nucleotidase 1-like isoform X1 [KO:K12304] [EC:3.6.1.6]
117735283  cant1a; soluble calcium-activated nucleotidase 1 [KO:K12304] [EC:3.6.1.6]
117736848  entpd4; ectonucleoside triphosphate diphosphohydrolase 4 isoform X1 [KO:K12305] [EC:3.6.1.6]
117725121  entpd5a; ectonucleoside triphosphate diphosphohydrolase 5 [KO:K01511] [EC:3.6.1.6]
117744052  entpd6; ectonucleoside triphosphate diphosphohydrolase 6 isoform X1 [KO:K01511] [EC:3.6.1.6]
117727377  enpp1; ectonucleotide pyrophosphatase/phosphodiesterase family member 1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
117739224  venom phosphodiesterase [KO:K01513] [EC:3.1.4.1 3.6.1.9]
117750993  asmtl; probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform X1 [KO:K25435] [EC:3.6.1.- 2.1.1.-]
117730543  nudt2; bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] [KO:K01518] [EC:3.6.1.17]
117745096  ctps1b; CTP synthase 1b [KO:K01937] [EC:6.3.4.2]
117739097  ctps1a; CTP synthase 1 isoform X1 [KO:K01937] [EC:6.3.4.2]
117727779  si:ch211-243j20.2; LOW QUALITY PROTEIN: uridine-cytidine kinase-like 1 [KO:K00876] [EC:2.7.1.48]
117733894  uckl1a; uridine-cytidine kinase-like 1a [KO:K00876] [EC:2.7.1.48]
117734071  uridine-cytidine kinase-like 1 [KO:K00876] [EC:2.7.1.48]
117746251  uck2b; uridine-cytidine kinase 2-B [KO:K00876] [EC:2.7.1.48]
117729885  uck2a; uridine-cytidine kinase 2-A isoform X1 [KO:K00876] [EC:2.7.1.48]
117748917  5'(3')-deoxyribonucleotidase, mitochondrial-like [KO:K01081] [EC:3.1.3.5]
117743720  nt5c2a; 5'-nucleotidase, cytosolic IIa isoform X1 [KO:K01081] [EC:3.1.3.5]
117727396  cytosolic 5'-nucleotidase 1A-like [KO:K01081] [EC:3.1.3.5]
117732883  cytosolic 5'-nucleotidase 1A [KO:K01081] [EC:3.1.3.5]
117739206  cytosolic 5'-nucleotidase 1A-like [KO:K01081] [EC:3.1.3.5]
117740396  nt5c2l1; 5'-nucleotidase, cytosolic II, like 1 isoform X1 [KO:K01081] [EC:3.1.3.5]
117751560  cytosolic 5'-nucleotidase 1A-like [KO:K01081] [EC:3.1.3.5]
117729920  nt5c2b; cytosolic purine 5'-nucleotidase isoform X1 [KO:K01081] [EC:3.1.3.5]
117727013  nt5e; 5'-nucleotidase [KO:K19970] [EC:3.1.3.5]
117750422  upp2; uridine phosphorylase 2 [KO:K00757] [EC:2.4.2.3]
117745793  upp1; uridine phosphorylase 1 isoform X1 [KO:K00757] [EC:2.4.2.3]
117732229  zgc:136858; pseudouridine-metabolizing bifunctional protein C1861.05 [KO:K16330] [EC:4.2.1.70 2.7.1.83]
117748859  LOW QUALITY PROTEIN: 7-methylguanosine phosphate-specific 5'-nucleotidase-like [KO:K24242] [EC:3.1.3.91]
117745146  nt5c3a; cytosolic 5'-nucleotidase 3 isoform X1 [KO:K24242] [EC:3.1.3.91]
117735072  LOW QUALITY PROTEIN: cytosolic 5'-nucleotidase 3-like [KO:K24242] [EC:3.1.3.91]
117730361  cdab; cytidine deaminase b [KO:K01489] [EC:3.5.4.5]
117747846  zgc:103586 [KO:K01489] [EC:3.5.4.5]
117742476  LOW QUALITY PROTEIN: ribonucleoside-diphosphate reductase large subunit-like [KO:K10807] [EC:1.17.4.1]
117741123  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
117727135  ribonucleoside-diphosphate reductase subunit M2-like isoform X1 [KO:K10808] [EC:1.17.4.1]
117738734  rrm2b; ribonucleoside-diphosphate reductase subunit M2 B [KO:K10808] [EC:1.17.4.1]
117736102  dctpp1; glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial [KO:K16904] [EC:3.6.1.12]
117727073  hddc2; HD domain-containing protein 2 [KO:K07023] [EC:3.1.3.89]
117743173  zgc:110540; deoxynucleoside kinase [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
117740817  dck; deoxycytidine kinase [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
117728617  dctd; deoxycytidylate deaminase isoform X1 [KO:K01493] [EC:3.5.4.12]
117729804  dtymk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
117728749  dut; deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial [KO:K01520] [EC:3.6.1.23]
117726292  tymp; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
117737378  thymidine kinase, cytosolic-like [KO:K00857] [EC:2.7.1.21]
117737381  thymidine kinase, cytosolic-like [KO:K00857] [EC:2.7.1.21]
117743665  tk2; thymidine kinase 2, mitochondrial isoform X1 [KO:K00857] [EC:2.7.1.21]
117749762  tyms; thymidylate synthase isoform X1 [KO:K00560] [EC:2.1.1.45]
117746356  dpydb; dihydropyrimidine dehydrogenase [NADP(+)] isoform X1 [KO:K00207] [EC:1.3.1.2]
117728132  dpys; dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
117736896  upb1; beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
clum00030  Pentose phosphate pathway
clum00220  Arginine biosynthesis
clum00250  Alanine, aspartate and glutamate metabolism
clum00280  Valine, leucine and isoleucine degradation
clum00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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