KEGG   PATHWAY: cpoo04146
Entry
cpoo04146                   Pathway                                
Name
Peroxisome - Crocodylus porosus (Australian saltwater crocodile)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
cpoo04146  Peroxisome
cpoo04146

Other DBs
GO: 0005777
Organism
Crocodylus porosus (Australian saltwater crocodile) [GN:cpoo]
Gene
109320769  PEX16; peroxisomal biogenesis factor 16 [KO:K13335]
109320161  PEX3; peroxisomal biogenesis factor 3 isoform X1 [KO:K13336]
109307272  ABCD3; ATP-binding cassette sub-family D member 3 [KO:K05677] [EC:7.6.2.4]
109308762  PEX1; peroxisome biogenesis factor 1 [KO:K13338]
109319032  PEX6; peroxisome biogenesis factor 6 [KO:K13339]
109316443  PEX26; peroxisome assembly protein 26 isoform X1 [KO:K13340]
109320191  PEX7; peroxisomal biogenesis factor 7 [KO:K13341]
109308463  PEX5L; PEX5-related protein isoform X1 [KO:K13342]
109319369  PEX5; peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
109314470  PEX14; peroxisomal membrane protein PEX14 isoform X1 [KO:K13343]
109319572  PEX13; peroxisome biogenesis factor 13 [KO:K13344]
109316991  PEX12; peroxisome assembly protein 12 [KO:K13345]
109314242  PEX10; peroxisome biogenesis factor 10 [KO:K13346]
109319733  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
109311573  MPV17; protein Mpv17 [KO:K13348]
109312355  MPV17L2; mpv17-like protein 2 [KO:K13348]
109313228  PXMP4; peroxisomal membrane protein 4 [KO:K13350]
109309107  PEX11A; peroxisomal membrane protein 11A isoform X1 [KO:K13351]
109312360  PEX11G; peroxisomal membrane protein 11C [KO:K13353]
109316714  SLC25A17; peroxisomal membrane protein PMP34 isoform X1 [KO:K13354]
109310399  HACL1; 2-hydroxyacyl-CoA lyase 1 isoform X1 [KO:K12261] [EC:4.1.2.63]
109307820  AMACR; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
109315799  PHYH; phytanoyl-CoA dioxygenase, peroxisomal isoform X1 [KO:K00477] [EC:1.14.11.18]
109315088  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
109322284  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
109311219  ACOX2; peroxisomal acyl-coenzyme A oxidase 2 isoform X1 [KO:K10214] [EC:1.17.99.3]
109323436  HSD17B4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
109323479  acyl-coenzyme A amino acid N-acyltransferase 1-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
109323497  acyl-coenzyme A amino acid N-acyltransferase 1-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
109315316  EHHADH; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
109306579  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
109313424  DECR2; peroxisomal 2,4-dienoyl-CoA reductase isoform X1 [KO:K13237] [EC:1.3.1.124]
109316000  ABCD2; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
109321211  ABCD4; ATP-binding cassette sub-family D member 4 isoform X1 [KO:K05678] [EC:7.6.2.8]
109308764  SLC27A2; very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
109308640  ACSL3; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
109309795  ACSL1; long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
109310079  ACSL6; long-chain-fatty-acid--CoA ligase 6 isoform X1 [KO:K01897] [EC:6.2.1.3]
109323813  ACSL5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
109313715  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
109322510  PECR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
109312661  ECI2; enoyl-CoA delta isomerase 2, mitochondrial [KO:K13239] [EC:5.3.3.8]
109310636  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 isoform X1 [KO:K17879] [EC:3.6.1.77]
109308152  NUDT12; peroxisomal NADH pyrophosphatase NUDT12 [KO:K03426] [EC:3.6.1.22]
109312510  NUDT13; nucleoside diphosphate-linked moiety X motif 13 [KO:K03426] [EC:3.6.1.22]
109310343  NUDT19; nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
109313118  ACOT8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
109313921  CRAT; carnitine O-acetyltransferase isoform X1 [KO:K00624] [EC:2.3.1.7]
109308405  CROT; peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
109310364  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
109320008  GNPAT; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
109322956  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
109321346  FAR1; fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
109316291  FAR2; fatty acyl-CoA reductase 2 [KO:K13356] [EC:1.2.1.84]
109312986  MVK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
109324786  PMVK; phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
109315367  AGXT; serine--pyruvate aminotransferase isoform X1 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
109312685  DAO; D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
109311932  DDO; D-aspartate oxidase isoform X1 [KO:K00272] [EC:1.4.3.1]
109322952  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
109316983  PIPOX; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
109311742  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform X1 [KO:K01640] [EC:4.1.3.4]
109318380  HMGCL; hydroxymethylglutaryl-CoA lyase, mitochondrial [KO:K01640] [EC:4.1.3.4]
109319129  HAO2; hydroxyacid oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
109319487  HAO1; hydroxyacid oxidase 1 isoform X1 [KO:K11517] [EC:1.1.3.15]
109321334  CAT; catalase [KO:K03781] [EC:1.11.1.6]
109305760  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
109320075  SOD2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
109317113  NOS2; nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
109307417  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
109311562  EPHX2; bifunctional epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
109319793  XDH; xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
cpoo00071  Fatty acid degradation
cpoo00120  Primary bile acid biosynthesis
cpoo00230  Purine metabolism
cpoo00564  Glycerophospholipid metabolism
cpoo00565  Ether lipid metabolism
cpoo00830  Retinol metabolism
cpoo00900  Terpenoid backbone biosynthesis
cpoo03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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