KEGG   PATHWAY: ddi03008
Entry
ddi03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Dictyostelium discoideum (cellular slime mold)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
ddi03008  Ribosome biogenesis in eukaryotes
ddi03008

Organism
Dictyostelium discoideum (cellular slime mold) [GN:ddi]
Gene
DDB_G0284601  csnk2b; hypothetical protein [KO:K03115]
DDB_G0276885  casK; CK2 family protein kinase [KO:K03097] [EC:2.7.11.1]
DDB_G0286481  CK2 family protein kinase [KO:K03097] [EC:2.7.11.1]
DDB_G0291438  nol6; Nrap family protein [KO:K14544]
DDB_G0269830  hypothetical protein [KO:K14545]
DDB_G0275141  utp5; NUC189 domain-containing protein [KO:K14546]
DDB_G0293462  cirh1a; U3 small nucleolar ribonucleoprotein [KO:K14548]
DDB_G0283581  utp15; U3 small nucleolar ribonucleoprotein [KO:K14549]
DDB_G0285875  BP28, C-terminal domain-containing protein [KO:K14550]
DDB_G0268898  wdr75; U3 small nucleolar ribonucleoprotein [KO:K14552]
DDB_G0271240  utp18; U3 small nucleolar ribonucleoprotein [KO:K14553]
DDB_G0277019  wdr36; U3 small nucleolar ribonucleoprotein [KO:K14554]
DDB_G0276283  utp13; U3 small nucleolar ribonucleoprotein [KO:K14555]
DDB_G0282623  wdr3; U3 small nucleolar ribonucleoprotein [KO:K14556]
DDB_G0279601  utp6; U3 small nucleolar ribonucleoprotein [KO:K14557]
DDB_G0284621  pwp2; WD40 repeat-containing protein [KO:K14558]
DDB_G0279245  mpp10; U3 small nucleolar ribonucleoprotein [KO:K14559]
DDB_G0278983  imp3; U3 small nucleolar ribonucleoprotein protein [KO:K14560]
DDB_G0302418  imp4; U3 small nucleolar ribonucleoprotein protein [KO:K14561]
DDB_G0269878  fbl; rRNA 2'-O-methyltransferase [KO:K14563] [EC:2.1.1.-]
DDB_G0285679  nol5a; NOP5 family protein [KO:K14564]
DDB_G0268098  hypothetical protein [KO:K14565]
DDB_G0282243  nhp2l1; U4/U6 small nuclear ribonucleoprotein [KO:K12845]
DDB_G0281933  nola4; DKCLD domain-containing protein [KO:K11131] [EC:5.4.99.-]
DDB_G0289699  nola2; H/ACA RNP complex subunit 2 [KO:K11129]
DDB_G0279013  nola1; Gar1 family protein [KO:K11128]
DDB_G0288347  nola3; H/ACA RNP complex subunit 3 [KO:K11130]
DDB_G0267606  fcf1; FCF1 family protein [KO:K14566]
DDB_G0279371  utp14; U3 small nucleolar ribonucleoprotein [KO:K14567]
DDB_G0268410  drnB; dicer-like protein [KO:K03685] [EC:3.1.26.3]
DDB_G0272732  emg1; hypothetical protein [KO:K14568] [EC:2.1.1.260]
DDB_G0287891  bms1l; BMS1-like ribosome biogenesis protein [KO:K14569]
DDB_G0268868  nat10; hypothetical protein [KO:K14521] [EC:2.3.1.-]
DDB_G0282803  rcl1; RNA 3'-terminal phosphate cyclase family protein [KO:K11108]
DDB_G0291320  pop1; RNase MRP protein subunit [KO:K01164] [EC:3.1.26.5]
DDB_G0288543  pop4; RNase MRP protein subunit [KO:K03538] [EC:3.1.26.5]
DDB_G0291662  pop5; RNase MRP protein subunit [KO:K03537] [EC:3.1.26.5]
DDB_G0289139  drpp20; RNase MRP protein subunit [KO:K14527] [EC:3.1.26.5]
DDB_G0269980  drpp30; RNase MRP protein subunit [KO:K03539] [EC:3.1.26.5]
DDB_G0279961  drpp40; RNase MRP protein subunit [KO:K14530] [EC:3.1.26.5]
DDB_G0291590  rexo1; RNA exonuclease 1 [KO:K14570] [EC:3.1.-.-]
DDB_G0273355  rexo2-1; RNA exonuclease 2 [KO:K13288] [EC:3.1.-.-]
DDB_G0273741  rexo2-2; RNA exonuclease 2 [KO:K13288] [EC:3.1.-.-]
DDB_G0276137  xrn1; 5'-3' exoribonuclease [KO:K12618] [EC:3.1.13.-]
DDB_G0269922  xrn2; 5'-3' exoribonuclease [KO:K12619] [EC:3.1.13.-]
DDB_G0289921  hypothetical protein [KO:K12619] [EC:3.1.13.-]
DDB_G0286641  hypothetical protein [KO:K06943]
DDB_G0285465  nog1; nucleolar GTP-binding protein 1 [KO:K06943]
DDB_G0280289  hypothetical protein [KO:K14537]
DDB_G0287147  gnl3; guanine nucleotide binding protein 3 [KO:K14538]
DDB_G0282181  nvl; AAA ATPase domain-containing protein [KO:K14571]
DDB_G0295765  mdn1; type A von Willebrand factor domain-containing protein [KO:K14572]
DDB_G0270156  hypothetical protein [KO:K14573]
DDB_G0279821  hypothetical protein [KO:K11883]
DDB_G0273059  cak1-1; casein kinase I [KO:K14758] [EC:2.7.11.1]
DDB_G0273737  cak1-2; casein kinase I [KO:K14758] [EC:2.7.11.1]
DDB_G0291235  ranA; GTP-binding nuclear protein Ran [KO:K07936]
DDB_G0291306  xpo1; chromosome region maintenance protein 1 [KO:K14290]
DDB_G0271306  nmd3; 60S ribosomal export protein [KO:K07562]
DDB_G0286455  hypothetical protein [KO:K14284]
DDB_G0281367  hypothetical protein [KO:K14285]
DDB_G0276493  eIF6; eukaryotic translation initiation factor 6 [KO:K03264]
DDB_G0272324  sbds; Shwachman-Bodian-Diamond syndrome protein [KO:K14574]
DDB_G0279689  eftud1; band 7 family protein [KO:K14536] [EC:3.6.5.-]
DDB_G0294292  unclassified GTPase [KO:K14539] [EC:3.6.1.-]
DDB_G0278435  AAA ATPase domain-containing protein [KO:K14575]
DDB_G0278493  hypothetical protein [KO:K18532] [EC:2.7.4.3]
DDB_G0280431  rio1; RIO family protein kinase [KO:K07178] [EC:2.7.11.1]
DDB_G0282099  rio2; RIO family protein kinase [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
ddi03010  Ribosome
KO pathway
ko03008   
LinkDB

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