KEGG   PATHWAY: dle04146
Entry
dle04146                    Pathway                                
Name
Peroxisome - Delphinapterus leucas (beluga whale)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
dle04146  Peroxisome
dle04146

Other DBs
GO: 0005777
Organism
Delphinapterus leucas (beluga whale) [GN:dle]
Gene
111183994  PEX16; peroxisomal biogenesis factor 16 isoform X1 [KO:K13335]
111166471  PEX3; peroxisomal biogenesis factor 3 isoform X1 [KO:K13336]
111167152  PEX19; peroxisomal biogenesis factor 19 isoform X1 [KO:K13337]
111164023  ABCD3; ATP-binding cassette sub-family D member 3 isoform X1 [KO:K05677] [EC:7.6.2.4]
111180916  PEX1; peroxisome biogenesis factor 1 isoform X1 [KO:K13338]
111178833  PEX6; peroxisome biogenesis factor 6 [KO:K13339]
111176584  PEX26; peroxisome assembly protein 26 [KO:K13340]
111166179  PEX7; peroxisomal biogenesis factor 7 [KO:K13341]
111176712  PEX5; peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
111173700  PEX5L; PEX5-related protein isoform X1 [KO:K13342]
111187274  PEX14; peroxisomal membrane protein PEX14 isoform X1 [KO:K13343]
111186505  PEX13; peroxisome biogenesis factor 13 [KO:K13344]
111171107  PEX12; LOW QUALITY PROTEIN: peroxisome assembly protein 12 [KO:K13345]
111187233  PEX10; peroxisome biogenesis factor 10 [KO:K13346]
111185634  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
111186983  PXMP2; LOW QUALITY PROTEIN: peroxisomal membrane protein 2 [KO:K13347]
111166675  MPV17L2; mpv17-like protein 2 [KO:K13348]
111174960  MPV17; protein Mpv17 isoform X1 [KO:K13348]
111184271  PXMP4; peroxisomal membrane protein 4 [KO:K13350]
111169665  PEX11A; peroxisomal membrane protein 11A [KO:K13351]
111179931  PEX11B; peroxisomal membrane protein 11B isoform X1 [KO:K13352]
111166206  PEX11G; peroxisomal membrane protein 11C isoform X1 [KO:K13353]
111186192  SLC25A17; peroxisomal membrane protein PMP34 isoform X1 [KO:K13354]
111168157  HACL1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
111187720  AMACR; alpha-methylacyl-CoA racemase isoform X2 [KO:K01796] [EC:5.1.99.4]
111178076  PHYH; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
111182805  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
111164820  peroxisomal acyl-coenzyme A oxidase 3 isoform X1 [KO:K00232] [EC:1.3.3.6]
111164821  peroxisomal acyl-coenzyme A oxidase 3-like [KO:K00232] [EC:1.3.3.6]
111174239  ACOX2; peroxisomal acyl-coenzyme A oxidase 2 isoform X1 [KO:K10214] [EC:1.17.99.3]
111183342  HSD17B4; peroxisomal multifunctional enzyme type 2 isoform X1 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
111175824  SCP2; non-specific lipid-transfer protein isoform X1 [KO:K08764] [EC:2.3.1.176]
111188015  BAAT; bile acid-CoA:amino acid N-acyltransferase isoform X1 [KO:K00659] [EC:2.3.1.65 3.1.2.2]
111173099  EHHADH; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
111164349  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
111185099  DECR2; peroxisomal 2,4-dienoyl-CoA reductase [KO:K13237] [EC:1.3.1.124]
111180887  ECH1; delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [KO:K12663] [EC:5.3.3.21]
111170577  ABCD1; ATP-binding cassette sub-family D member 1 isoform X1 [KO:K05675] [EC:7.6.2.4]
111174112  ABCD2; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
111176259  ABCD4; ATP-binding cassette sub-family D member 4 isoform X1 [KO:K05678] [EC:7.6.2.8]
111181607  SLC27A2; very long-chain acyl-CoA synthetase isoform X1 [KO:K08746] [EC:6.2.1.- 6.2.1.3]
111171872  ACSL3; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
111182405  ACSL6; long-chain-fatty-acid--CoA ligase 6 isoform X1 [KO:K01897] [EC:6.2.1.3]
111172304  ACSL5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
111173405  ACSL1; long-chain-fatty-acid--CoA ligase 1 [KO:K01897] [EC:6.2.1.3]
111165801  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
111172047  PECR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
111181321  ECI2; enoyl-CoA delta isomerase 2, mitochondrial isoform X1 [KO:K13239] [EC:5.3.3.8]
111179483  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 isoform X1 [KO:K17879] [EC:3.6.1.77]
111183833  NUDT12; peroxisomal NADH pyrophosphatase NUDT12 isoform X1 [KO:K03426] [EC:3.6.1.22]
111183507  NUDT13; LOW QUALITY PROTEIN: nucleoside diphosphate-linked moiety X motif 13 [KO:K03426] [EC:3.6.1.22]
111180945  NUDT19; nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
111170154  ACOT8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
111177136  CRAT; carnitine O-acetyltransferase isoform X1 [KO:K00624] [EC:2.3.1.7]
111182205  CROT; peroxisomal carnitine O-octanoyltransferase isoform X1 [KO:K05940] [EC:2.3.1.137]
111179455  MLYCD; malonyl-CoA decarboxylase, mitochondrial isoform X1 [KO:K01578] [EC:4.1.1.9]
111163980  GNPAT; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
111172904  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal isoform X1 [KO:K00803] [EC:2.5.1.26]
111165223  FAR1; fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
111176879  FAR2; fatty acyl-CoA reductase 2 [KO:K13356] [EC:1.2.1.84]
111162690  MVK; mevalonate kinase isoform X1 [KO:K00869] [EC:2.7.1.36]
111167105  PMVK; phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
111172005  AGXT; serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
111162813  DAO; D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
111164589  DDO; D-aspartate oxidase isoform X2 [KO:K00272] [EC:1.4.3.1]
111169637  IDH2; isocitrate dehydrogenase [NADP], mitochondrial isoform X1 [KO:K00031] [EC:1.1.1.42]
111171779  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
111172154  PAOX; peroxisomal N(1)-acetyl-spermine/spermidine oxidase isoform X1 [KO:K00308] [EC:1.5.3.13]
111185986  PIPOX; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
111178656  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
111163232  HMGCL; hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X1 [KO:K01640] [EC:4.1.3.4]
111179964  HAO2; hydroxyacid oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
111165630  HAO1; hydroxyacid oxidase 1 isoform X1 [KO:K11517] [EC:1.1.3.15]
111179785  CAT; catalase [KO:K03781] [EC:1.11.1.6]
111183805  PRDX5; peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
111172168  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
111167565  SOD2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
111185989  nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
111175750  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
111185405  EPHX2; bifunctional epoxide hydrolase 2 isoform X1 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
111177335  GSTK1; glutathione S-transferase kappa 1 isoform X1 [KO:K13299] [EC:2.5.1.18]
111174909  XDH; xanthine dehydrogenase/oxidase isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
111164139  dehydrogenase/reductase SDR family member 4 isoform X1 [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
dle00071  Fatty acid degradation
dle00120  Primary bile acid biosynthesis
dle00230  Purine metabolism
dle00564  Glycerophospholipid metabolism
dle00565  Ether lipid metabolism
dle00830  Retinol metabolism
dle00900  Terpenoid backbone biosynthesis
dle03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

DBGET integrated database retrieval system