KEGG   PATHWAY: hgl00020
Entry
hgl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Heterocephalus glaber (naked mole-rat)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hgl00020  Citrate cycle (TCA cycle)
hgl00020

Module
hgl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hgl00020]
hgl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hgl00020]
hgl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hgl00020]
hgl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hgl00020]
hgl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hgl00020]
Other DBs
GO: 0006099
Organism
Heterocephalus glaber (naked mole-rat) [GN:hgl]
Gene
101710152  Cs; citrate synthase [KO:K01647] [EC:2.3.3.1]
101700349  Acly; ATP citrate lyase [KO:K01648] [EC:2.3.3.8]
101716545  Aco1; aconitase 1 [KO:K01681] [EC:4.2.1.3]
101705755  Aco2; aconitase 2 [KO:K01681] [EC:4.2.1.3]
101705662  Idh1; isocitrate dehydrogenase (NADP(+)) 1, cytosolic [KO:K00031] [EC:1.1.1.42]
101708667  Idh2; isocitrate dehydrogenase (NADP(+)) 2, mitochondrial [KO:K00031] [EC:1.1.1.42]
101709094  Idh3b; isocitrate dehydrogenase 3 (NAD(+)) beta [KO:K00030] [EC:1.1.1.41]
101721638  Idh3g; isocitrate dehydrogenase 3 (NAD(+)) gamma [KO:K00030] [EC:1.1.1.41]
101706503  Idh3a; isocitrate dehydrogenase 3 (NAD(+)) alpha [KO:K00030] [EC:1.1.1.41]
101716205  Ogdh; oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
101709409  Ogdhl; oxoglutarate dehydrogenase-like [KO:K00164] [EC:1.2.4.2]
101696795  Dlst; dihydrolipoamide S-succinyltransferase [KO:K00658] [EC:2.3.1.61]
101699518  Dld; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
101711758  Suclg1; succinate-CoA ligase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
101706452  Sucla2; succinate-CoA ligase ADP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
101718468  Suclg2; succinate-CoA ligase GDP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
101697591  Sdha; succinate dehydrogenase complex flavoprotein subunit A [KO:K00234] [EC:1.3.5.1]
101720891  Sdhb; succinate dehydrogenase complex iron sulfur subunit B [KO:K00235] [EC:1.3.5.1]
101698043  Sdhc; succinate dehydrogenase complex subunit C [KO:K00236]
101702014  Sdhd; succinate dehydrogenase complex subunit D [KO:K00237]
101715373  Fh; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
101719728  Mdh1; malate dehydrogenase 1 [KO:K00025] [EC:1.1.1.37]
101713764  Mdh2; malate dehydrogenase 2 [KO:K00026] [EC:1.1.1.37]
101711800  Pc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
101708730  Pck1; phosphoenolpyruvate carboxykinase 1 [KO:K01596] [EC:4.1.1.32]
101706336  Pck2; phosphoenolpyruvate carboxykinase 2, mitochondrial [KO:K01596] [EC:4.1.1.32]
101710793  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
101716937  Pdha1; pyruvate dehydrogenase (lipoamide) alpha 1 [KO:K00161] [EC:1.2.4.1]
101714134  Pdhb; pyruvate dehydrogenase (lipoamide) beta [KO:K00162] [EC:1.2.4.1]
101698667  Dlat; dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hgl00010  Glycolysis / Gluconeogenesis
hgl00053  Ascorbate and aldarate metabolism
hgl00061  Fatty acid biosynthesis
hgl00062  Fatty acid elongation
hgl00071  Fatty acid degradation
hgl00190  Oxidative phosphorylation
hgl00220  Arginine biosynthesis
hgl00250  Alanine, aspartate and glutamate metabolism
hgl00280  Valine, leucine and isoleucine degradation
hgl00350  Tyrosine metabolism
hgl00470  D-Amino acid metabolism
hgl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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