KEGG   PATHWAY: hrf00270
Entry
hrf00270                    Pathway                                
Name
Cysteine and methionine metabolism - Haliotis rufescens (red abalone)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
hrf00270  Cysteine and methionine metabolism
hrf00270

Module
hrf_M00034  Methionine salvage pathway [PATH:hrf00270]
hrf_M00035  Methionine degradation [PATH:hrf00270]
hrf_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:hrf00270]
Other DBs
GO: 0006534 0006555
Organism
Haliotis rufescens (red abalone) [GN:hrf]
Gene
124152507  cysteine synthase 1-like [KO:K01738] [EC:2.5.1.47]
124147947  cystathionine gamma-lyase-like [KO:K01758] [EC:4.4.1.1]
124140893  cystathionine gamma-lyase-like [KO:K01758] [EC:4.4.1.1]
124151941  kynurenine aminotransferase-like isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
124115507  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
124115516  cystathionine beta-synthase-like isoform X1 [KO:K01697] [EC:4.2.1.22]
124137148  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
124146516  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
124146517  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
124146524  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
124138282  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
124138283  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
124138284  LOW QUALITY PROTEIN: bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase-like [KO:K00544] [EC:2.1.1.5]
124129484  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
124140307  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
124140311  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
124140312  betaine--homocysteine S-methyltransferase 1-like isoform X2 [KO:K00544] [EC:2.1.1.5]
124110872  homocysteine S-methyltransferase-like isoform X1 [KO:K00547] [EC:2.1.1.10]
124131824  methionine synthase-like [KO:K00548] [EC:2.1.1.13]
124152036  S-adenosylmethionine synthase-like isoform X1 [KO:K00789] [EC:2.5.1.6]
124152038  S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
124134450  methionine adenosyltransferase 2 subunit beta-like [KO:K00789] [EC:2.5.1.6]
124111194  S-adenosylmethionine decarboxylase proenzyme-like [KO:K01611] [EC:4.1.1.50]
124123783  spermidine synthase-like [KO:K00797] [EC:2.5.1.16]
124150993  spermidine synthase-like isoform X1 [KO:K00797] [EC:2.5.1.16]
124149314  methylthioribose kinase-like [KO:K00899] [EC:2.7.1.100]
124149315  methylthioribose kinase-like [KO:K00899] [EC:2.7.1.100]
124138814  S-methyl-5'-thioadenosine phosphorylase-like isoform X1 [KO:K00772] [EC:2.4.2.28]
124134054  purine nucleoside phosphorylase LACC1-like isoform X1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
124134056  purine nucleoside phosphorylase LACC1-like isoform X1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
124115603  methylthioribose-1-phosphate isomerase-like [KO:K08963] [EC:5.3.1.23]
124140558  methylthioribulose-1-phosphate dehydratase-like [KO:K08964] [EC:4.2.1.109]
124146630  enolase-phosphatase E1-like [KO:K09880] [EC:3.1.3.77]
124133227  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase-like isoform X1 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
124131589  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase-like [KO:K08967] [EC:1.13.11.53 1.13.11.54]
124147250  tyrosine aminotransferase-like [KO:K00815] [EC:2.6.1.5]
124132876  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
124151981  aplysianin-A-like [KO:K03334] [EC:1.4.3.2]
124152001  aplysianin-A-like [KO:K03334] [EC:1.4.3.2]
124110692  putative L-amino-acid oxidase YobN [KO:K03334] [EC:1.4.3.2]
124110693  putative L-amino-acid oxidase YobN [KO:K03334] [EC:1.4.3.2]
124110715  putative L-amino-acid oxidase YobN [KO:K03334] [EC:1.4.3.2]
124110716  putative L-amino-acid oxidase YobN isoform X1 [KO:K03334] [EC:1.4.3.2]
124110823  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
124110824  L-amino-acid oxidase-like isoform X2 [KO:K03334] [EC:1.4.3.2]
124113997  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
124113999  aplysianin-A-like [KO:K03334] [EC:1.4.3.2]
124114004  aplysianin-A-like [KO:K03334] [EC:1.4.3.2]
124116185  putative L-amino-acid oxidase YobN isoform X1 [KO:K03334] [EC:1.4.3.2]
124149366  aplysianin-A-like [KO:K03334] [EC:1.4.3.2]
124145513  DNA (cytosine-5)-methyltransferase 1-like [KO:K00558] [EC:2.1.1.37]
124143249  adenosylhomocysteinase-like [KO:K01251] [EC:3.13.2.1]
124117092  S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
124112911  branched-chain-amino-acid aminotransferase, cytosolic-like [KO:K00826] [EC:2.6.1.42]
124147410  alanine--glyoxylate aminotransferase 2, mitochondrial-like [KO:K00827] [EC:2.6.1.44 2.6.1.40]
124149498  glutamate--cysteine ligase catalytic subunit-like [KO:K11204] [EC:6.3.2.2]
124139324  glutamate--cysteine ligase regulatory subunit-like [KO:K11205]
124129269  glutathione synthetase-like isoform X1 [KO:K21456] [EC:6.3.2.3]
124115427  cysteine dioxygenase type 1-like [KO:K00456] [EC:1.13.11.20]
124141251  aspartate aminotransferase, cytoplasmic-like isoform X1 [KO:K14454] [EC:2.6.1.1]
124119679  aspartate aminotransferase, mitochondrial-like [KO:K14455] [EC:2.6.1.1]
124151884  thiosulfate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
124123003  3-mercaptopyruvate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
124139505  uncharacterized protein LOC124139505 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
124139506  thiosulfate sulfurtransferase-like isoform X1 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
124148743  thiosulfate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
124117430  bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like [KO:K05396] [EC:4.4.1.15]
124117431  bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like [KO:K05396] [EC:4.4.1.15]
124117432  bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial-like isoform X1 [KO:K05396] [EC:4.4.1.15]
124124065  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
124137028  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
124120256  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
124114057  serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
124145459  D-3-phosphoglycerate dehydrogenase-like [KO:K00058] [EC:1.1.1.95 1.1.1.399]
124117546  phosphoserine aminotransferase-like [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
hrf00010  Glycolysis / Gluconeogenesis
hrf00250  Alanine, aspartate and glutamate metabolism
hrf00260  Glycine, serine and threonine metabolism
hrf00290  Valine, leucine and isoleucine biosynthesis
hrf00430  Taurine and hypotaurine metabolism
hrf00480  Glutathione metabolism
hrf00620  Pyruvate metabolism
hrf00640  Propanoate metabolism
hrf00770  Pantothenate and CoA biosynthesis
hrf00900  Terpenoid backbone biosynthesis
hrf00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

DBGET integrated database retrieval system