KEGG   PATHWAY: loc00270
Entry
loc00270                    Pathway                                
Name
Cysteine and methionine metabolism - Lepisosteus oculatus (spotted gar)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
loc00270  Cysteine and methionine metabolism
loc00270

Module
loc_M00035  Methionine degradation [PATH:loc00270]
loc_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:loc00270]
Other DBs
GO: 0006534 0006555
Organism
Lepisosteus oculatus (spotted gar) [GN:loc]
Gene
102694824  cth; cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
102690907  ccbl1; kynurenine--oxoglutarate transaminase 1 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
102689615  ccbl2; kynurenine--oxoglutarate transaminase 3 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
102682531  cbs; cystathionine beta-synthase isoform X2 [KO:K01697] [EC:4.2.1.22]
102689652  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
102696344  homocysteine S-methyltransferase-like isoform X1 [KO:K00547] [EC:2.1.1.10]
102682398  mtr; methionine synthase [KO:K00548] [EC:2.1.1.13]
102694915  mat2a; S-adenosylmethionine synthase isoform type-2 [KO:K00789] [EC:2.5.1.6]
102682419  S-adenosylmethionine synthase isoform type-2-like [KO:K00789] [EC:2.5.1.6]
102693291  mat1a; S-adenosylmethionine synthase isoform type-1 [KO:K00789] [EC:2.5.1.6]
102691879  mat2b; methionine adenosyltransferase 2 subunit beta isoform X1 [KO:K00789] [EC:2.5.1.6]
102696818  amd1; S-adenosylmethionine decarboxylase proenzyme isoform X1 [KO:K01611] [EC:4.1.1.50]
102689904  srm; spermidine synthase isoform X2 [KO:K00797] [EC:2.5.1.16]
102697794  sms; spermine synthase [KO:K00802] [EC:2.5.1.22]
102695976  mtap; S-methyl-5'-thioadenosine phosphorylase isoform X2 [KO:K00772] [EC:2.4.2.28]
102696282  lacc1; laccase domain-containing protein 1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
102685368  apip; methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
102693739  enoph1; enolase-phosphatase E1 isoform X1 [KO:K09880] [EC:3.1.3.77]
102688142  adi1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
102691511  tat; tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
102696231  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
102698727  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
102691176  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
102697278  gnmt; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
102685323  dnmt1; DNA (cytosine-5)-methyltransferase 1 isoform X1 [KO:K00558] [EC:2.1.1.37]
102694135  dnmt3a; DNA (cytosine-5)-methyltransferase 3A isoform X1 [KO:K17398] [EC:2.1.1.37]
102683145  DNA (cytosine-5)-methyltransferase 3B-like isoform X1 [KO:K17399] [EC:2.1.1.37]
102682940  uncharacterized protein LOC102682940 [KO:K17399] [EC:2.1.1.37]
102693138  adenosylhomocysteinase 2 isoform X1 [KO:K01251] [EC:3.13.2.1]
102694969  ahcy; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
102697302  ahcyl2; adenosylhomocysteinase 3 isoform X4 [KO:K01251] [EC:3.13.2.1]
102684535  bcat1; branched-chain-amino-acid aminotransferase, cytosolic isoform X2 [KO:K00826] [EC:2.6.1.42]
102682826  agxt2; alanine--glyoxylate aminotransferase 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
102687661  gclc; glutamate--cysteine ligase catalytic subunit isoform X1 [KO:K11204] [EC:6.3.2.2]
102691424  gclm; glutamate--cysteine ligase regulatory subunit [KO:K11205]
102694968  gss; glutathione synthetase [KO:K21456] [EC:6.3.2.3]
102698527  cdo1; cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
102689506  aspartate aminotransferase, cytoplasmic-like isoform X1 [KO:K14454] [EC:2.6.1.1]
102695390  got1; aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
102685362  got2; aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
102683333  mpst; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
102697781  L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
102697466  uevld; ubiquitin-conjugating enzyme E2 variant 3 [KO:K00016] [EC:1.1.1.27]
102697691  ldhb; L-lactate dehydrogenase B chain [KO:K00016] [EC:1.1.1.27]
102697061  mdh1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
102688410  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
102698247  sds; L-serine dehydratase/L-threonine deaminase [KO:K17989] [EC:4.3.1.17 4.3.1.19]
102698451  serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
102692497  phgdh; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
102692184  psat1; LOW QUALITY PROTEIN: phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
loc00010  Glycolysis / Gluconeogenesis
loc00250  Alanine, aspartate and glutamate metabolism
loc00260  Glycine, serine and threonine metabolism
loc00290  Valine, leucine and isoleucine biosynthesis
loc00430  Taurine and hypotaurine metabolism
loc00480  Glutathione metabolism
loc00620  Pyruvate metabolism
loc00640  Propanoate metabolism
loc00770  Pantothenate and CoA biosynthesis
loc00900  Terpenoid backbone biosynthesis
loc00920  Sulfur metabolism
KO pathway
ko00270   
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