KEGG   PATHWAY: lww04146
Entry
lww04146                    Pathway                                
Name
Peroxisome - Leptonychotes weddellii (Weddell seal)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
lww04146  Peroxisome
lww04146

Other DBs
GO: 0005777
Organism
Leptonychotes weddellii (Weddell seal) [GN:lww]
Gene
102747543  PEX16; peroxisomal biogenesis factor 16 isoform X1 [KO:K13335]
102742562  peroxisomal biogenesis factor 3 isoform X2 [KO:K13336]
102735707  peroxisomal biogenesis factor 3 [KO:K13336]
102750846  PEX19; peroxisomal biogenesis factor 19 [KO:K13337]
102727720  ABCD3; ATP-binding cassette sub-family D member 3 [KO:K05677] [EC:7.6.2.4]
102736046  PEX1; peroxisome biogenesis factor 1 isoform X1 [KO:K13338]
102741386  PEX6; peroxisome biogenesis factor 6 isoform X1 [KO:K13339]
102732397  PEX26; peroxisome assembly protein 26 isoform X1 [KO:K13340]
102731735  PEX7; peroxisomal biogenesis factor 7 [KO:K13341]
102736406  PEX5L; PEX5-related protein [KO:K13342]
102742298  PEX5; peroxisomal biogenesis factor 5 isoform X2 [KO:K13342]
102745672  peroxisomal targeting signal 1 receptor [KO:K13342]
102750571  PEX14; peroxisomal membrane protein PEX14 [KO:K13343]
102733665  PEX13; peroxisome biogenesis factor 13 [KO:K13344]
102741515  PEX12; peroxisome assembly protein 12 [KO:K13345]
102746760  PEX10; peroxisome biogenesis factor 10 isoform X2 [KO:K13346]
102732021  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
102737119  PXMP2; peroxisomal membrane protein 2 isoform X2 [KO:K13347]
102748800  MPV17L2; mpv17-like protein 2 isoform X3 [KO:K13348]
102734153  MPV17; protein Mpv17 isoform X1 [KO:K13348]
102727875  MPV17L; mpv17-like protein [KO:K13349]
102751092  peroxisomal membrane protein 4-like [KO:K13350]
102749133  PEX11A; peroxisomal membrane protein 11A isoform X1 [KO:K13351]
102748321  PEX11B; peroxisomal membrane protein 11B [KO:K13352]
102729971  PEX11G; peroxisomal membrane protein 11C [KO:K13353]
102747039  SLC25A17; peroxisomal membrane protein PMP34 [KO:K13354]
102734410  HACL1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
102738877  AMACR; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
102744381  PHYH; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
102726189  peroxisomal acyl-coenzyme A oxidase 1-like [KO:K00232] [EC:1.3.3.6]
102732202  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 isoform X2 [KO:K00232] [EC:1.3.3.6]
102749711  ACOX2; peroxisomal acyl-coenzyme A oxidase 2 isoform X1 [KO:K10214] [EC:1.17.99.3]
102736737  HSD17B4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
102730831  non-specific lipid-transfer protein [KO:K08764] [EC:2.3.1.176]
102729180  acyl-coenzyme A amino acid N-acyltransferase 2-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
102729479  LOW QUALITY PROTEIN: bile acid-CoA:amino acid N-acyltransferase [KO:K00659] [EC:2.3.1.65 3.1.2.2]
102732268  EHHADH; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
102745426  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
102733951  DECR2; peroxisomal 2,4-dienoyl-CoA reductase [KO:K13237] [EC:1.3.1.124]
102730875  ECH1; delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [KO:K12663] [EC:5.3.3.21]
102727028  ABCD1; ATP-binding cassette sub-family D member 1 [KO:K05675] [EC:7.6.2.4]
102735911  ABCD2; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
102733217  ABCD4; ATP-binding cassette sub-family D member 4 isoform X5 [KO:K05678] [EC:7.6.2.8]
102740809  ACSL3; long-chain-fatty-acid--CoA ligase 3 isoform X1 [KO:K01897] [EC:6.2.1.3]
102732797  ACSL5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
102735593  ACSL1; long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
102751204  long-chain-fatty-acid--CoA ligase 6 [KO:K01897] [EC:6.2.1.3]
102736983  ACSL4; long-chain-fatty-acid--CoA ligase 4 [KO:K01897] [EC:6.2.1.3]
102730243  PECR; peroxisomal trans-2-enoyl-CoA reductase isoform X1 [KO:K07753] [EC:1.3.1.38]
102728771  ECI2; enoyl-CoA delta isomerase 2, mitochondrial isoform X1 [KO:K13239] [EC:5.3.3.8]
102741412  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
102749106  NUDT12; peroxisomal NADH pyrophosphatase NUDT12 isoform X1 [KO:K03426] [EC:3.6.1.22]
102745848  NUDT13; nucleoside diphosphate-linked moiety X motif 13 isoform X1 [KO:K03426] [EC:3.6.1.22]
102732856  ACOT8; acyl-coenzyme A thioesterase 8 isoform X1 [KO:K11992] [EC:3.1.2.27]
102744905  CRAT; carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
102733928  CROT; peroxisomal carnitine O-octanoyltransferase isoform X1 [KO:K05940] [EC:2.3.1.137]
102733800  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
102729554  GNPAT; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
102738437  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
102747513  FAR1; fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
102749806  FAR2; fatty acyl-CoA reductase 2 [KO:K13356] [EC:1.2.1.84]
102744819  mevalonate kinase-like [KO:K00869] [EC:2.7.1.36]
102736090  mevalonate kinase [KO:K00869] [EC:2.7.1.36]
102738854  PMVK; phosphomevalonate kinase isoform X1 [KO:K13273] [EC:2.7.4.2]
102741621  AGXT; serine--pyruvate aminotransferase isoform X2 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
102730192  D-amino-acid oxidase-like [KO:K00273] [EC:1.4.3.3]
102737450  DDO; D-aspartate oxidase isoform X1 [KO:K00272] [EC:1.4.3.1]
102746567  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic isoform X2 [KO:K00031] [EC:1.1.1.42]
102739921  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
102730987  peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like [KO:K00308] [EC:1.5.3.13]
102750424  PIPOX; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
102750245  HMGCL; hydroxymethylglutaryl-CoA lyase, mitochondrial [KO:K01640] [EC:4.1.3.4]
102726050  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform X1 [KO:K01640] [EC:4.1.3.4]
102738381  HAO1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
102730230  HAO2; hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
102741276  CAT; catalase [KO:K03781] [EC:1.11.1.6]
102727045  PRDX5; peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
102740826  peroxiredoxin-5, mitochondrial-like [KO:K11187] [EC:1.11.1.24]
102750662  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
102743815  SOD2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
102750879  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
102740258  GSTK1; glutathione S-transferase kappa 1 [KO:K13299] [EC:2.5.1.18]
102731349  XDH; xanthine dehydrogenase/oxidase isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
102749349  dehydrogenase/reductase SDR family member 4 isoform X1 [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
lww00071  Fatty acid degradation
lww00120  Primary bile acid biosynthesis
lww00230  Purine metabolism
lww00564  Glycerophospholipid metabolism
lww00565  Ether lipid metabolism
lww00830  Retinol metabolism
lww00900  Terpenoid backbone biosynthesis
lww03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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