KEGG   PATHWAY: mdo04146
Entry
mdo04146                    Pathway                                
Name
Peroxisome - Monodelphis domestica (gray short-tailed opossum)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
mdo04146  Peroxisome
mdo04146

Other DBs
GO: 0005777
Organism
Monodelphis domestica (gray short-tailed opossum) [GN:mdo]
Gene
100011482  PEX16; peroxisomal biogenesis factor 16 [KO:K13335]
100026377  PEX3; peroxisomal biogenesis factor 3 [KO:K13336]
100029711  PEX19; peroxisomal biogenesis factor 19 [KO:K13337]
100029338  ABCD3; ATP binding cassette subfamily D member 3 [KO:K05677] [EC:7.6.2.4]
100021560  PEX1; peroxisomal biogenesis factor 1 [KO:K13338]
100010671  PEX6; peroxisomal biogenesis factor 6 [KO:K13339]
100022137  PEX26; peroxisomal biogenesis factor 26 [KO:K13340]
100031538  PEX7; peroxisomal biogenesis factor 7 [KO:K13341]
100016946  PEX5; peroxisomal biogenesis factor 5 [KO:K13342]
100010787  PEX5L; peroxisomal biogenesis factor 5 like [KO:K13342]
100618761  PEX14; peroxisomal biogenesis factor 14 [KO:K13343]
100031942  PEX13; peroxisomal biogenesis factor 13 [KO:K13344]
100021388  PEX12; peroxisomal biogenesis factor 12 [KO:K13345]
100018530  PEX10; peroxisomal biogenesis factor 10 [KO:K13346]
100027546  PEX2; peroxisomal biogenesis factor 2 [KO:K06664]
100019260  PXMP2; peroxisomal membrane protein 2 [KO:K13347]
100619063  MPV17; MPV17, mitochondrial inner membrane protein [KO:K13348]
100014147  MPV17L2; MPV17 mitochondrial inner membrane protein like 2 [KO:K13348]
100023520  MPV17L; MPV17 mitochondrial inner membrane protein like [KO:K13349]
100032299  PXMP4; peroxisomal membrane protein 4 [KO:K13350]
100015764  PEX11A; peroxisomal biogenesis factor 11 alpha [KO:K13351]
100012909  PEX11B; peroxisomal biogenesis factor 11 beta [KO:K13352]
100617731  PEX11G; peroxisomal biogenesis factor 11 gamma [KO:K13353]
100027871  SLC25A17; solute carrier family 25 member 17 [KO:K13354]
100030500  HACL1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
100015444  AMACR; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
100014074  PHYH; phytanoyl-CoA 2-hydroxylase [KO:K00477] [EC:1.14.11.18]
100022432  ACOX1; acyl-CoA oxidase 1 [KO:K00232] [EC:1.3.3.6]
100019995  ACOX3; acyl-CoA oxidase 3, pristanoyl [KO:K00232] [EC:1.3.3.6]
100028782  ACOX2; acyl-CoA oxidase 2 [KO:K10214] [EC:1.17.99.3]
100028098  HSD17B4; hydroxysteroid 17-beta dehydrogenase 4 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
100017946  SCP2; sterol carrier protein 2 [KO:K08764] [EC:2.3.1.176]
100023136  BAAT; bile acid-CoA:amino acid N-acyltransferase [KO:K00659] [EC:2.3.1.65 3.1.2.2]
100017693  acyl-coenzyme A amino acid N-acyltransferase 2-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
100026751  EHHADH; enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
100021694  ACAA1; acetyl-CoA acyltransferase 1 [KO:K07513] [EC:2.3.1.16]
100020025  DECR2; 2,4-dienoyl-CoA reductase 2 [KO:K13237] [EC:1.3.1.124]
100013539  ECH1; enoyl-CoA hydratase 1 [KO:K12663] [EC:5.3.3.21]
100027916  ABCD1; ATP binding cassette subfamily D member 1 [KO:K05675] [EC:7.6.2.4]
100019263  ABCD2; ATP binding cassette subfamily D member 2 [KO:K05676] [EC:7.6.2.4]
100023941  ABCD4; ATP binding cassette subfamily D member 4 [KO:K05678] [EC:7.6.2.8]
100025984  SLC27A2; solute carrier family 27 member 2 [KO:K08746] [EC:6.2.1.- 6.2.1.3]
100018120  ACSL6; acyl-CoA synthetase long-chain family member 6 [KO:K01897] [EC:6.2.1.3]
100015666  ACSL3; acyl-CoA synthetase long-chain family member 3 [KO:K01897] [EC:6.2.1.3]
100013435  ACSL4; acyl-CoA synthetase long-chain family member 4 [KO:K01897] [EC:6.2.1.3]
100012070  ACSL1; acyl-CoA synthetase long-chain family member 1 [KO:K01897] [EC:6.2.1.3]
100027738  ACSL5; acyl-CoA synthetase long-chain family member 5 [KO:K01897] [EC:6.2.1.3]
100013660  peroxisomal trans-2-enoyl-CoA reductase-like [KO:K07753] [EC:1.3.1.38]
100013785  peroxisomal trans-2-enoyl-CoA reductase-like [KO:K07753] [EC:1.3.1.38]
100020890  ECI2; enoyl-CoA delta isomerase 2 [KO:K13239] [EC:5.3.3.8]
100014208  NUDT7; nudix hydrolase 7 [KO:K17879] [EC:3.6.1.77]
100015443  NUDT12; nudix hydrolase 12 [KO:K03426] [EC:3.6.1.22]
100010627  NUDT13; nudix hydrolase 13 [KO:K03426] [EC:3.6.1.22]
100013178  NUDT19; nudix hydrolase 19 [KO:K13355] [EC:3.6.1.77]
100021873  ACOT8; acyl-CoA thioesterase 8 [KO:K11992] [EC:3.1.2.27]
100012605  CRAT; carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
100027224  CROT; carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
100027732  MLYCD; malonyl-CoA decarboxylase [KO:K01578] [EC:4.1.1.9]
100029521  GNPAT; glyceronephosphate O-acyltransferase [KO:K00649] [EC:2.3.1.42]
100019424  AGPS; alkylglycerone phosphate synthase [KO:K00803] [EC:2.5.1.26]
100013219  FAR2; fatty acyl-CoA reductase 2 [KO:K13356] [EC:1.2.1.84]
100021793  FAR1; fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
100016213  MVK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
100021196  PMVK; phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
100616909  AGXT; alanine-glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
100024682  DAO; D-amino acid oxidase [KO:K00273] [EC:1.4.3.3]
100029260  DDO; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
751083  IDH1; isocitrate dehydrogenase (NADP(+)) 1, cytosolic [KO:K00031] [EC:1.1.1.42]
100015156  IDH2; isocitrate dehydrogenase (NADP(+)) 2, mitochondrial [KO:K00031] [EC:1.1.1.42]
100618593  PAOX; polyamine oxidase [KO:K00308] [EC:1.5.3.13]
100025469  PIPOX; pipecolic acid and sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
100010594  HMGCL; 3-hydroxymethyl-3-methylglutaryl-CoA lyase [KO:K01640] [EC:4.1.3.4]
100018233  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 [KO:K01640] [EC:4.1.3.4]
100012628  HAO2; hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
100033283  HAO1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
100031495  CAT; catalase [KO:K03781] [EC:1.11.1.6]
100021266  PRDX5; peroxiredoxin 5 [KO:K11187] [EC:1.11.1.24]
100014993  SOD1; superoxide dismutase 1 [KO:K04565] [EC:1.15.1.1]
100032426  SOD2; superoxide dismutase 2 [KO:K04564] [EC:1.15.1.1]
100024271  NOS2; nitric oxide synthase 2 [KO:K13241] [EC:1.14.13.39]
100013335  PRDX1; peroxiredoxin 1 [KO:K13279] [EC:1.11.1.24]
100030580  EPHX2; epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
100011709  GSTK1; glutathione S-transferase kappa 1 [KO:K13299] [EC:2.5.1.18]
103105104  glutathione S-transferase kappa 1-like [KO:K13299] [EC:2.5.1.18]
100031481  XDH; xanthine dehydrogenase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
100030652  DHRS4; dehydrogenase/reductase SDR family member 4 [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
mdo00071  Fatty acid degradation
mdo00120  Primary bile acid biosynthesis
mdo00230  Purine metabolism
mdo00564  Glycerophospholipid metabolism
mdo00565  Ether lipid metabolism
mdo00830  Retinol metabolism
mdo00900  Terpenoid backbone biosynthesis
mdo03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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