KEGG   PATHWAY: minc00900
Entry
minc00900                   Pathway                                
Name
Terpenoid backbone biosynthesis - Mangifera indica (mango)
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
minc00900  Terpenoid backbone biosynthesis
minc00900

Module
minc_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:minc00900]
minc_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:minc00900]
minc_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:minc00900]
Other DBs
GO: 0009240 0016091
Organism
Mangifera indica (mango) [GN:minc]
Gene
123200683  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
123221234  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
123210479  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
123212188  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic isoform X1 [KO:K01662] [EC:2.2.1.7]
123200179  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
123212097  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [KO:K00099] [EC:1.1.1.267]
123214040  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [KO:K00991] [EC:2.7.7.60]
123198275  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic [KO:K00919] [EC:2.7.1.148]
123204717  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [KO:K01770] [EC:4.6.1.12]
123207832  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [KO:K01770] [EC:4.6.1.12]
123211266  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [KO:K01770] [EC:4.6.1.12]
123226009  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic isoform X1 [KO:K03526] [EC:1.17.7.1 1.17.7.3]
123209347  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like [KO:K03526] [EC:1.17.7.1 1.17.7.3]
123214649  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [KO:K03527] [EC:1.17.7.4]
123216866  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
123219467  probable acetyl-CoA acetyltransferase, cytosolic 2 [KO:K00626] [EC:2.3.1.9]
123223131  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
123204611  hydroxymethylglutaryl-CoA synthase-like [KO:K01641] [EC:2.3.3.10]
123209966  hydroxymethylglutaryl-CoA synthase [KO:K01641] [EC:2.3.3.10]
123203268  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [KO:K00021] [EC:1.1.1.34]
123229190  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [KO:K00021] [EC:1.1.1.34]
123199305  LOW QUALITY PROTEIN: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [KO:K00021] [EC:1.1.1.34]
123213049  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [KO:K00021] [EC:1.1.1.34]
123197506  mevalonate kinase-like isoform X1 [KO:K00869] [EC:2.7.1.36]
123221641  mevalonate kinase-like isoform X1 [KO:K00869] [EC:2.7.1.36]
123196196  phosphomevalonate kinase, peroxisomal [KO:K00938] [EC:2.7.4.2]
123193683  diphosphomevalonate decarboxylase MVD2, peroxisomal-like [KO:K01597] [EC:4.1.1.33]
123205993  diphosphomevalonate decarboxylase MVD2, peroxisomal-like [KO:K01597] [EC:4.1.1.33]
123230346  diphosphomevalonate decarboxylase MVD2, peroxisomal-like [KO:K01597] [EC:4.1.1.33]
123213209  isopentenyl phosphate kinase isoform X1 [KO:K06981] [EC:2.7.4.26]
123220124  isopentenyl-diphosphate Delta-isomerase I [KO:K01823] [EC:5.3.3.2]
123209208  isopentenyl-diphosphate Delta-isomerase I-like [KO:K01823] [EC:5.3.3.2]
123201532  farnesyl pyrophosphate synthase-like isoform X1 [KO:K00787] [EC:2.5.1.1 2.5.1.10]
123208043  farnesyl pyrophosphate synthase-like [KO:K00787] [EC:2.5.1.1 2.5.1.10]
123220573  farnesyl pyrophosphate synthase [KO:K00787] [EC:2.5.1.1 2.5.1.10]
123200839  solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [KO:K14066] [EC:2.5.1.1]
123221903  solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [KO:K14066] [EC:2.5.1.1]
123214753  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
123226091  geranylgeranyl pyrophosphate synthase, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
123226332  geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
123199589  LOW QUALITY PROTEIN: geranylgeranyl pyrophosphate synthase, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
123224672  geranylgeranyl pyrophosphate synthase, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
123201391  solanesyl diphosphate synthase 1, chloroplastic [KO:K05356] [EC:2.5.1.84 2.5.1.85]
123229888  solanesyl diphosphate synthase 2, chloroplastic-like isoform X1 [KO:K05356] [EC:2.5.1.84 2.5.1.85]
123226417  dehydrodolichyl diphosphate synthase 6 [KO:K11778] [EC:2.5.1.87]
123215705  dehydrodolichyl diphosphate synthase CPT3-like [KO:K11778] [EC:2.5.1.87]
123208844  dehydrodolichyl diphosphate synthase CPT3-like [KO:K11778] [EC:2.5.1.87]
123209283  dehydrodolichyl diphosphate synthase 2 [KO:K11778] [EC:2.5.1.87]
123211083  LOW QUALITY PROTEIN: cis-prenyltransferase 4, chloroplastic-like [KO:K11778] [EC:2.5.1.87]
123212877  dehydrodolichyl diphosphate synthase complex subunit NUS1 [KO:K11778] [EC:2.5.1.87]
123204610  geranylgeranyl diphosphate reductase, chloroplastic-like [KO:K10960] [EC:1.3.1.83 1.3.1.111]
123212206  geranylgeranyl diphosphate reductase, chloroplastic [KO:K10960] [EC:1.3.1.83 1.3.1.111]
123201668  probable terpene synthase 12 [KO:K12742] [EC:4.2.3.27]
123222461  isoprene synthase, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
123222493  isoprene synthase, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
123223710  probable terpene synthase 12 [KO:K12742] [EC:4.2.3.27]
123223711  isoprene synthase, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
123223712  probable terpene synthase 12 [KO:K12742] [EC:4.2.3.27]
123207456  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like [KO:K05955] [EC:2.5.1.58 2.5.1.59]
123207742  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like [KO:K05955] [EC:2.5.1.58 2.5.1.59]
123207926  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like [KO:K05955] [EC:2.5.1.58 2.5.1.59]
123221937  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like [KO:K05955] [EC:2.5.1.58 2.5.1.59]
123206025  protein farnesyltransferase subunit beta-like [KO:K05954] [EC:2.5.1.58]
123195471  protein farnesyltransferase subunit beta-like [KO:K05954] [EC:2.5.1.58]
123222534  protein farnesyltransferase subunit beta-like [KO:K05954] [EC:2.5.1.58]
123226928  CAAX prenyl protease 2 [KO:K08658] [EC:3.4.26.1]
123217070  CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
123224503  CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
123214562  protein-S-isoprenylcysteine O-methyltransferase B isoform X1 [KO:K00587] [EC:2.1.1.100]
123192430  protein-S-isoprenylcysteine O-methyltransferase B-like isoform X1 [KO:K00587] [EC:2.1.1.100]
123218729  protein-S-isoprenylcysteine O-methyltransferase B-like [KO:K00587] [EC:2.1.1.100]
123224845  isoprenylcysteine alpha-carbonyl methylesterase ICME-like isoform X1 [KO:K15889] [EC:3.1.1.-]
123214415  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 [KO:K15889] [EC:3.1.1.-]
123205980  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 isoform X1 [KO:K15889] [EC:3.1.1.-]
123198034  isoprenylcysteine alpha-carbonyl methylesterase ICME-like isoform X1 [KO:K15889] [EC:3.1.1.-]
123199441  farnesylcysteine lyase isoform X1 [KO:K05906] [EC:1.8.3.5 1.8.3.6]
123228976  putative dihydroflavonol 4-reductase [KO:K15891] [EC:1.1.1.354]
123209613  probable phytol kinase 3, chloroplastic [KO:K15892] [EC:2.7.1.216]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
minc00010  Glycolysis / Gluconeogenesis
minc00100  Steroid biosynthesis
minc00130  Ubiquinone and other terpenoid-quinone biosynthesis
minc00270  Cysteine and methionine metabolism
minc00510  N-Glycan biosynthesis
minc00902  Monoterpenoid biosynthesis
minc00904  Diterpenoid biosynthesis
minc00906  Carotenoid biosynthesis
minc00908  Zeatin biosynthesis
minc00909  Sesquiterpenoid and triterpenoid biosynthesis
KO pathway
ko00900   
LinkDB

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