KEGG   PATHWAY: mmer04146
Entry
mmer04146                   Pathway                                
Name
Peroxisome - Mercenaria mercenaria (northern quahog)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
mmer04146  Peroxisome
mmer04146

Other DBs
GO: 0005777
Organism
Mercenaria mercenaria (northern quahog) [GN:mmer]
Gene
123535607  peroxisomal membrane protein PEX16-like [KO:K13335]
123525232  peroxisomal biogenesis factor 3-like [KO:K13336]
123561877  peroxisomal biogenesis factor 19-like [KO:K13337]
123525320  ATP-binding cassette sub-family D member 3-like isoform X1 [KO:K05677] [EC:7.6.2.4]
123555089  peroxisomal ATPase PEX1-like [KO:K13338]
123542341  peroxisomal ATPase PEX6-like [KO:K13339]
123547591  uncharacterized protein LOC123547591 [KO:K13340]
123551471  peroxisomal targeting signal 2 receptor-like [KO:K13341]
123526344  peroxisomal targeting signal 1 receptor-like isoform X1 [KO:K13342]
123527386  peroxisomal membrane protein PEX14-like [KO:K13343]
123524478  peroxisomal membrane protein PEX13-like [KO:K13344]
123534534  peroxisome assembly protein 12-like [KO:K13345]
123553314  peroxisome biogenesis factor 10-like [KO:K13346]
123527490  peroxisome biogenesis factor 2-like [KO:K06664]
123535426  peroxisomal membrane protein 2-like [KO:K13347]
123524616  mpv17-like protein 2 [KO:K13348]
123549054  mpv17-like protein 2 [KO:K13348]
123548923  mpv17-like protein [KO:K13349]
123537213  peroxisomal membrane protein 4-like isoform X1 [KO:K13350]
123523071  peroxisomal membrane protein 11B-like [KO:K13352]
123538795  peroxisomal membrane protein 11C-like [KO:K13353]
123563973  peroxisomal membrane protein PMP34-like [KO:K13354]
128546649  2-hydroxyacyl-CoA lyase 1-like [KO:K12261] [EC:4.1.2.63]
123531889  2-hydroxyacyl-CoA lyase 1-like [KO:K12261] [EC:4.1.2.63]
123566530  alpha-methylacyl-CoA racemase-like [KO:K01796] [EC:5.1.99.4]
123528791  phytanoyl-CoA dioxygenase, peroxisomal-like [KO:K00477] [EC:1.14.11.18]
123534499  peroxisomal acyl-coenzyme A oxidase 3-like [KO:K00232] [EC:1.3.3.6]
123539666  peroxisomal acyl-coenzyme A oxidase 1-like [KO:K00232] [EC:1.3.3.6]
123539667  peroxisomal acyl-coenzyme A oxidase 1-like [KO:K00232] [EC:1.3.3.6]
123539705  peroxisomal acyl-coenzyme A oxidase 1-like isoform X3 [KO:K00232] [EC:1.3.3.6]
123530566  peroxisomal acyl-coenzyme A oxidase 1-like [KO:K00232] [EC:1.3.3.6]
123566556  peroxisomal multifunctional enzyme type 2-like isoform X1 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
128555682  sterol carrier protein 2-like isoform X1 [KO:K08764] [EC:2.3.1.176]
123524430  sterol carrier protein 2-like [KO:K08764] [EC:2.3.1.176]
123550893  bile acid-CoA:amino acid N-acyltransferase-like isoform X1 [KO:K00659] [EC:2.3.1.65 3.1.2.2]
123552208  bile acid-CoA:amino acid N-acyltransferase-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
123531470  3-ketoacyl-CoA thiolase B, peroxisomal-like [KO:K07513] [EC:2.3.1.16]
123565071  peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing]-like [KO:K13237] [EC:1.3.1.124]
123531935  delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like isoform X2 [KO:K12663] [EC:5.3.3.21]
123530128  ATP-binding cassette sub-family D member 1-like [KO:K05676] [EC:7.6.2.4]
123542589  lysosomal cobalamin transporter ABCD4-like [KO:K05678] [EC:7.6.2.8]
123522915  long-chain fatty acid transport protein 2-like isoform X1 [KO:K08746] [EC:6.2.1.- 6.2.1.3]
123522916  long-chain fatty acid transport protein 2-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
123523183  long-chain fatty acid transport protein 2-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
123560138  long-chain-fatty-acid--CoA ligase 1-like isoform X1 [KO:K01897] [EC:6.2.1.3]
123561192  long-chain-fatty-acid--CoA ligase 1-like [KO:K01897] [EC:6.2.1.3]
123564210  long-chain-fatty-acid--CoA ligase 1-like isoform X2 [KO:K01897] [EC:6.2.1.3]
123554369  long-chain-fatty-acid--CoA ligase 4-like [KO:K01897] [EC:6.2.1.3]
123559626  peroxisomal trans-2-enoyl-CoA reductase-like [KO:K07753] [EC:1.3.1.38]
123549045  enoyl-CoA delta isomerase 2-like isoform X1 [KO:K13239] [EC:5.3.3.8]
123548342  uncharacterized protein LOC123548342 isoform X2 [KO:K17879] [EC:3.6.1.77]
128558145  uncharacterized Nudix hydrolase NudL-like [KO:K17879] [EC:3.6.1.77]
123566358  NAD-capped RNA hydrolase NUDT12-like isoform X1 [KO:K03426] [EC:3.6.1.22]
123549710  acyl-coenzyme A diphosphatase NUDT19-like [KO:K13355] [EC:3.6.1.77]
123549209  acyl-coenzyme A thioesterase 8-like isoform X1 [KO:K11992] [EC:3.1.2.27]
123541438  carnitine O-acetyltransferase-like isoform X1 [KO:K00624] [EC:2.3.1.7]
123531015  peroxisomal carnitine O-octanoyltransferase-like isoform X1 [KO:K05940] [EC:2.3.1.137]
123552524  malonyl-CoA decarboxylase, mitochondrial-like isoform X1 [KO:K01578] [EC:4.1.1.9]
123524081  dihydroxyacetone phosphate acyltransferase-like [KO:K00649] [EC:2.3.1.42]
123559872  alkyldihydroxyacetonephosphate synthase, peroxisomal-like [KO:K00803] [EC:2.5.1.26]
123536795  fatty acyl-CoA reductase 1-like [KO:K13356] [EC:1.2.1.84]
123537570  fatty acyl-CoA reductase 1-like [KO:K13356] [EC:1.2.1.84]
123534200  mevalonate kinase-like [KO:K00869] [EC:2.7.1.36]
123522955  phosphomevalonate kinase-like isoform X1 [KO:K13273] [EC:2.7.4.2]
123538488  alanine--glyoxylate aminotransferase-like isoform X1 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
123524800  D-aspartate oxidase-like isoform X1 [KO:K00273] [EC:1.4.3.3]
123548670  D-aspartate oxidase-like [KO:K00272] [EC:1.4.3.1]
123549198  D-aspartate oxidase-like isoform X1 [KO:K00272] [EC:1.4.3.1]
123549447  D-aspartate oxidase-like [KO:K00272] [EC:1.4.3.1]
123550628  D-aspartate oxidase-like [KO:K00272] [EC:1.4.3.1]
123535899  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
123540309  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
123533106  peroxisomal sarcosine oxidase-like [KO:K00306] [EC:1.5.3.1 1.5.3.7]
123533990  peroxisomal sarcosine oxidase-like [KO:K00306] [EC:1.5.3.1 1.5.3.7]
123534083  peroxisomal sarcosine oxidase-like [KO:K00306] [EC:1.5.3.1 1.5.3.7]
123534084  peroxisomal sarcosine oxidase-like [KO:K00306] [EC:1.5.3.1 1.5.3.7]
123534319  peroxisomal sarcosine oxidase-like [KO:K00306] [EC:1.5.3.1 1.5.3.7]
123535267  peroxisomal sarcosine oxidase-like [KO:K00306] [EC:1.5.3.1 1.5.3.7]
123541206  hydroxymethylglutaryl-CoA lyase, mitochondrial-like isoform X1 [KO:K01640] [EC:4.1.3.4]
123552261  catalase-like isoform X1 [KO:K03781] [EC:1.11.1.6]
123532918  peroxiredoxin-5, mitochondrial-like [KO:K11187] [EC:1.11.1.24]
123533401  peroxiredoxin-5, mitochondrial-like [KO:K11187] [EC:1.11.1.24]
123523313  superoxide dismutase [Cu-Zn]-like [KO:K04565] [EC:1.15.1.1]
123527858  superoxide dismutase [Cu-Zn]-like [KO:K04565] [EC:1.15.1.1]
123528218  superoxide dismutase [Cu-Zn]-like [KO:K04565] [EC:1.15.1.1]
123528219  superoxide dismutase [Cu-Zn]-like [KO:K04565] [EC:1.15.1.1]
123550919  uncharacterized protein LOC123550919 isoform X1 [KO:K04565] [EC:1.15.1.1]
123551844  uncharacterized protein LOC123551844 [KO:K04565] [EC:1.15.1.1]
123552103  superoxide dismutase [Cu-Zn]-like [KO:K04565] [EC:1.15.1.1]
128556512  superoxide dismutase [Mn], mitochondrial-like [KO:K04564] [EC:1.15.1.1]
123523935  peroxiredoxin-like isoform X1 [KO:K13279] [EC:1.11.1.24]
123526324  glutathione S-transferase kappa 1-like [KO:K13299] [EC:2.5.1.18]
128548357  glutathione S-transferase kappa 1-like [KO:K13299] [EC:2.5.1.18]
123544928  xanthine dehydrogenase/oxidase-like isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
123523256  xanthine dehydrogenase/oxidase-like [KO:K00106] [EC:1.17.1.4 1.17.3.2]
123523267  xanthine dehydrogenase/oxidase-like [KO:K00106] [EC:1.17.1.4 1.17.3.2]
123535767  uncharacterized protein LOC123535767 isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
123535779  uncharacterized protein LOC123535779 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
123558173  xanthine dehydrogenase/oxidase-like [KO:K00106] [EC:1.17.1.4 1.17.3.2]
123536060  xanthine dehydrogenase-like [KO:K00106] [EC:1.17.1.4 1.17.3.2]
123536061  xanthine dehydrogenase-like [KO:K00106] [EC:1.17.1.4 1.17.3.2]
123561824  xanthine dehydrogenase/oxidase-like isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
128556121  xanthine dehydrogenase/oxidase-like isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
123548564  dehydrogenase/reductase SDR family member 4-like isoform X4 [KO:K11147] [EC:1.1.-.-]
123548984  dehydrogenase/reductase SDR family member 4-like [KO:K11147] [EC:1.1.-.-]
123550552  dehydrogenase/reductase SDR family member 4-like [KO:K11147] [EC:1.1.-.-]
128557811  dehydrogenase/reductase SDR family member 4-like [KO:K11147] [EC:1.1.-.-]
128557816  dehydrogenase/reductase SDR family member 4-like [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
mmer00071  Fatty acid degradation
mmer00230  Purine metabolism
mmer00564  Glycerophospholipid metabolism
mmer00565  Ether lipid metabolism
mmer00830  Retinol metabolism
mmer00900  Terpenoid backbone biosynthesis
KO pathway
ko04146   
LinkDB

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