KEGG   PATHWAY: mze00270
Entry
mze00270                    Pathway                                
Name
Cysteine and methionine metabolism - Maylandia zebra (zebra mbuna)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
mze00270  Cysteine and methionine metabolism
mze00270

Module
mze_M00034  Methionine salvage pathway [PATH:mze00270]
mze_M00035  Methionine degradation [PATH:mze00270]
mze_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:mze00270]
Other DBs
GO: 0006534 0006555
Organism
Maylandia zebra (zebra mbuna) [GN:mze]
Gene
101468515  cth; cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
101466800  kyat1; kynurenine--oxoglutarate transaminase 1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
101486988  kyat3; kynurenine--oxoglutarate transaminase 3 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
101487143  cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
106674481  cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
101479719  cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
101482601  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
101464577  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
112435685  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
101472552  homocysteine S-methyltransferase 1 [KO:K00547] [EC:2.1.1.10]
101471939  mtr; methionine synthase isoform X1 [KO:K00548] [EC:2.1.1.13]
101487602  S-adenosylmethionine synthase isoform X1 [KO:K00789] [EC:2.5.1.6]
101466580  S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
101482841  S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
101477745  S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
101464146  methionine adenosyltransferase 2 subunit beta isoform X1 [KO:K00789] [EC:2.5.1.6]
112429673  methionine adenosyltransferase 2 subunit beta-like [KO:K00789] [EC:2.5.1.6]
101478089  S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
101481703  amd1; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
101486619  srm; spermidine synthase [KO:K00797] [EC:2.5.1.16]
101475695  sms; spermine synthase [KO:K00802] [EC:2.5.1.22]
101472535  mtap; S-methyl-5'-thioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
101477327  lacc1; laccase domain-containing protein 1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
101465585  mri1; methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
101470528  apip; methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
101466298  enoph1; enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
101476590  adi1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
101484403  tat; tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
101473989  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
101470741  L-amino-acid oxidase [KO:K03334] [EC:1.4.3.2]
101473683  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
112431521  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
112431528  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
101484870  gnmt; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
101465655  dnmt1; DNA (cytosine-5)-methyltransferase 1 isoform X2 [KO:K00558] [EC:2.1.1.37]
101476133  DNA (cytosine-5)-methyltransferase 3A isoform X1 [KO:K17398] [EC:2.1.1.37]
101471420  dnmt3a; DNA (cytosine-5)-methyltransferase 3A isoform X1 [KO:K17398] [EC:2.1.1.37]
101473965  uncharacterized protein LOC101473965 isoform X1 [KO:K17399] [EC:2.1.1.37]
101463990  DNA (cytosine-5)-methyltransferase 3B isoform X1 [KO:K17399] [EC:2.1.1.37]
101481520  uncharacterized protein LOC101481520 isoform X1 [KO:K17399] [EC:2.1.1.37]
101475912  S-adenosylhomocysteine hydrolase-like protein 1 [KO:K01251] [EC:3.13.2.1]
101481435  ahcy; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
101469478  S-adenosylhomocysteine hydrolase-like protein 1 [KO:K01251] [EC:3.13.2.1]
101485913  ahcyl1; S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
101468900  ahcyl2; adenosylhomocysteinase 3 isoform X1 [KO:K01251] [EC:3.13.2.1]
101486418  bcat1; branched-chain-amino-acid aminotransferase, cytosolic [KO:K00826] [EC:2.6.1.42]
101485072  branched-chain-amino-acid aminotransferase, cytosolic [KO:K00826] [EC:2.6.1.42]
101477079  agxt2; alanine--glyoxylate aminotransferase 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
101472352  gclc; glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
101473626  gclm; glutamate--cysteine ligase regulatory subunit [KO:K11205]
101466390  gss; glutathione synthetase [KO:K21456] [EC:6.3.2.3]
101466957  cdo1; cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
101479044  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
101464376  aspartate aminotransferase, cytoplasmic isoform X1 [KO:K14454] [EC:2.6.1.1]
101464046  got1; aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
101481020  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
112434739  aspartate aminotransferase, mitochondrial-like [KO:K14455] [EC:2.6.1.1]
101487463  mpst; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
101474330  3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
101474340  L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
101475396  L-lactate dehydrogenase B chain [KO:K00016] [EC:1.1.1.27]
101469130  L-lactate dehydrogenase C chain isoform X1 [KO:K00016] [EC:1.1.1.27]
112430013  L-lactate dehydrogenase C chain isoform X1 [KO:K00016] [EC:1.1.1.27]
101463565  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
101468982  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
101483745  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
101479205  sds; L-serine dehydratase/L-threonine deaminase [KO:K17989] [EC:4.3.1.17 4.3.1.19]
101484046  serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
101474426  phgdh; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
101477344  psat1; phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
mze00010  Glycolysis / Gluconeogenesis
mze00250  Alanine, aspartate and glutamate metabolism
mze00260  Glycine, serine and threonine metabolism
mze00290  Valine, leucine and isoleucine biosynthesis
mze00430  Taurine and hypotaurine metabolism
mze00480  Glutathione metabolism
mze00620  Pyruvate metabolism
mze00640  Propanoate metabolism
mze00770  Pantothenate and CoA biosynthesis
mze00900  Terpenoid backbone biosynthesis
mze00920  Sulfur metabolism
KO pathway
ko00270   
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