KEGG   PATHWAY: ncr03018
Entry
ncr03018                    Pathway                                
Name
RNA degradation - Neurospora crassa
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ncr03018  RNA degradation
ncr03018

Other DBs
GO: 0006401
Organism
Neurospora crassa [GN:ncr]
Gene
NCU06998  scavenger mRNA decapping enzyme [KO:K12584] [EC:3.6.1.59]
NCU04155  exosome component 1 [KO:K07573]
NCU04009  exosome complex exonuclease Rrp4 [KO:K03679]
NCU00693  exosome complex exonuclease RRP40 [KO:K03681]
NCU03159  3' exoribonuclease [KO:K12586]
NCU08026  3' exoribonuclease [KO:K12587]
NCU01806  3' exoribonuclease [KO:K12589]
NCU00812  exosome complex exonuclease RRP41 [KO:K11600]
NCU03268  hypothetical protein [KO:K12590]
NCU00334  3' exoribonuclease [KO:K03678]
NCU03065  mitotic control protein dis3 [KO:K12585] [EC:3.1.13.-]
NCU02256  exosome complex exonuclease Rrp6 [KO:K12591] [EC:3.1.13.-]
NCU16328  hypothetical protein [KO:K12592]
NCU05588  topoisomerase TRF4 [KO:K03514] [EC:2.7.7.19]
NCU04617  hypothetical protein [KO:K12597]
NCU03363  frh; FRQ-interacting RNA helicase [KO:K12598] [EC:5.6.2.6]
NCU01857  DEAD/DEAH box RNA helicase [KO:K12599] [EC:5.6.2.6]
NCU09438  translation repressor/antiviral protein Ski3 [KO:K12600]
NCU03517  Ski8 [KO:K12601]
NCU07779  ccr4; glucose-repressible alcohol dehydrogenase transcriptional effector [KO:K12603] [EC:3.1.13.4]
NCU04766  Ccr4-Not transcription complex subunit [KO:K12604]
NCU11372  hypothetical protein [KO:K12605]
NCU03855  CCR4-NOT transcription complex [KO:K12580]
NCU04073  hypothetical protein [KO:K10643] [EC:2.3.2.27]
NCU09001  CCR4-NOT transcription complex subunit 7 [KO:K12581]
NCU07071  cell differentiation protein rcd1 [KO:K12606]
NCU04097  ABC transporter [KO:K12608]
NCU02750  PH domain-containing protein [KO:K12609]
NCU07559  hypothetical protein [KO:K01148] [EC:3.1.13.4]
NCU04799  polyadenylate-binding protein [KO:K13126]
NCU10733  PAB-dependent poly(A)-specific ribonuclease subunit pan-2 [KO:K12571] [EC:3.1.13.4]
NCU01929  PAB-dependent poly(A)-specific ribonuclease subunit pan-3 [KO:K12572]
NCU07889  hypothetical protein [KO:K12613] [EC:3.6.1.62]
NCU06149  ATP-dependent RNA helicase dhh-1 [KO:K12614] [EC:5.6.2.7]
NCU00427  hypothetical protein [KO:K12615]
NCU06540  topisomerase II associated protein [KO:K12617]
NCU06678  exonuclease Kem1 [KO:K12618] [EC:3.1.13.-]
NCU01643  5'-3' exoribonuclease 2 [KO:K12619] [EC:3.1.13.-]
NCU01601  hypothetical protein [KO:K12620]
NCU07382  U6 snRNA-associated Sm-like protein LSm2 [KO:K12621]
NCU09512  U6 small nuclear ribonucleoprotein [KO:K12622]
NCU07683  small nuclear ribonucleoprotein [KO:K12623]
NCU03766  small nuclear ribonucleoprotein [KO:K12624]
NCU10352  U6 snRNA-associated Sm-like protein LSm6 [KO:K12625]
NCU01930  U6 snRNP-associated protein Lsm7 [KO:K12626]
NCU03085  small nuclear ribonucleoprotein Lsm8 [KO:K12627]
NCU10042  emp-7; embden-meyerhof pathway-7 [KO:K01689] [EC:4.2.1.11]
NCU01870  Eno3 protein [KO:K01689] [EC:4.2.1.11]
NCU00629  emp-3; embden-meyerhof pathway-3 [KO:K00850] [EC:2.7.1.11]
NCU08693  hsp70-5; heat shock protein 70-5 [KO:K04043]
NCU01589  hsp60; heat shock protein 60 [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
ncr03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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