KEGG   PATHWAY: nlo04120
Entry
nlo04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Neodiprion lecontei (redheaded pine sawfly)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
nlo04120  Ubiquitin mediated proteolysis
nlo04120

Other DBs
GO: 0016567
Organism
Neodiprion lecontei (redheaded pine sawfly) [GN:nlo]
Gene
107222253  polyubiquitin-A [KO:K08770]
107226572  ubiquitin-60S ribosomal protein L40 [KO:K02927]
107228114  ubiquitin-40S ribosomal protein S27a [KO:K02977]
107226205  ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
107221008  SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
107222032  SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
107227647  NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
107222666  ubiquitin-conjugating enzyme E2-17 kDa isoform X1 [KO:K10573] [EC:2.3.2.23]
107227551  ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
107218806  ubiquitin-conjugating enzyme E2-17 kDa [KO:K06689] [EC:2.3.2.23]
107222322  ubiquitin-conjugating enzyme E2-24 kDa [KO:K20217] [EC:2.3.2.23]
107220113  NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
107225755  ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
107221054  ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
107228117  ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
107218684  SUMO-conjugating enzyme UBC9-B [KO:K10577]
107223778  ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
107226028  ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
107218583  ubiquitin-conjugating enzyme E2-22 kDa isoform X3 [KO:K04649] [EC:2.3.2.23]
107223150  ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
107220851  NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
107221671  ubiquitin-conjugating enzyme E2 N isoform X1 [KO:K10580] [EC:2.3.2.23]
107218120  (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O [KO:K10581] [EC:2.3.2.24]
107223973  ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
107226881  ubiquitin-conjugating enzyme E2 Q2 isoform X2 [KO:K10582] [EC:2.3.2.23]
107218017  ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
107216578  ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
107226874  ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
107224321  baculoviral IAP repeat-containing protein 6 isoform X4 [KO:K10586] [EC:2.3.2.23]
107219555  ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
107222329  ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
107225361  ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
107221802  E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
107220750  E3 ubiquitin-protein ligase Su(dx) [KO:K05633] [EC:2.3.2.26]
107227926  E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
107224915  E3 ubiquitin-protein ligase Nedd-4 isoform X2 [KO:K10591] [EC:2.3.2.26]
107219168  E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
107221811  E3 ubiquitin-protein ligase UBR5 isoform X8 [KO:K10593] [EC:2.3.2.26]
107217482  E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
107224012  probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
107220272  ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
107220801  ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
107216519  E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
107222321  RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
107221611  pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
107222864  RING finger protein 37 [KO:K10600]
107225234  E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K04707] [EC:2.3.2.27]
107219850  E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
107217270  E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
107222633  TNF receptor-associated factor 6 isoform X2 [KO:K03175] [EC:2.3.2.27]
107222122  E3 ubiquitin-protein ligase COP1-like [KO:K10143] [EC:2.3.2.27]
107217577  RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
107219082  baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16060]
107219074  death-associated inhibitor of apoptosis 1 isoform X4 [KO:K16061]
107218623  E3 SUMO-protein ligase PIAS1 isoform X2 [KO:K04706] [EC:2.3.2.-]
107218298  E3 ubiquitin-protein ligase synoviolin B isoform X1 [KO:K10601] [EC:2.3.2.27]
107223391  uncharacterized protein LOC107223391 isoform X2 [KO:K10606] [EC:2.3.2.27]
107219752  RING-box protein 1A [KO:K03868] [EC:2.3.2.32]
107219759  RING-box protein 1 [KO:K03868] [EC:2.3.2.32]
107218859  cullin-1 isoform X2 [KO:K03347]
107219758  S-phase kinase-associated protein 1 [KO:K03094]
107225582  S-phase kinase-associated protein 1-like [KO:K03094]
107226763  beta-TrCP isoform X1 [KO:K03362]
107225319  S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
107216728  F-box/WD repeat-containing protein 7 [KO:K10260]
107224356  cullin-2 [KO:K03870]
107225947  elongin-C [KO:K03872]
107226360  elongin-B [KO:K03873]
107224133  cullin-3-A isoform X2 [KO:K03869]
107225668  kelch-like ECH-associated protein 1B isoform X1 [KO:K10456]
107224690  rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
107227942  cullin-4A isoform X1 [KO:K10609]
107218291  DNA damage-binding protein 1 [KO:K10610]
107225837  DET1 homolog [KO:K10571]
107226259  RING-box protein 2 [KO:K10611]
107220880  cullin-5 [KO:K10612]
107222517  anaphase-promoting complex subunit 2 [KO:K03349]
107220868  cell division cycle protein 20 homolog [KO:K03363]
107216697  fizzy-related protein homolog [KO:K03364]
107226731  anaphase-promoting complex subunit 1 [KO:K03348]
107221327  cell division cycle protein 27 homolog isoform X1 [KO:K03350]
107222738  anaphase-promoting complex subunit 5 [KO:K03352]
107220570  cell division cycle protein 16 homolog [KO:K03353]
107219012  anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
107217005  cell division cycle protein 23 homolog [KO:K03355]
107221110  anaphase-promoting complex subunit 10 [KO:K03357]
107220840  anaphase-promoting complex subunit 13 [KO:K12456]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
nlo03050  Proteasome
KO pathway
ko04120   
LinkDB

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