KEGG   PATHWAY: nss00270
Entry
nss00270                    Pathway                                
Name
Cysteine and methionine metabolism - Notechis scutatus (mainland tiger snake)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
nss00270  Cysteine and methionine metabolism
nss00270

Module
nss_M00034  Methionine salvage pathway [PATH:nss00270]
nss_M00035  Methionine degradation [PATH:nss00270]
nss_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:nss00270]
Other DBs
GO: 0006534 0006555
Organism
Notechis scutatus (mainland tiger snake) [GN:nss]
Gene
113419779  CTH; cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
113416318  KYAT3; kynurenine--oxoglutarate transaminase 3 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
113427449  KYAT1; kynurenine--oxoglutarate transaminase 1 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
113416218  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
113416249  cystathionine beta-synthase-like isoform X1 [KO:K01697] [EC:4.2.1.22]
113413944  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
113419350  LOW QUALITY PROTEIN: betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
113413284  MTR; methionine synthase [KO:K00548] [EC:2.1.1.13]
113427676  MAT2A; S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
113421659  methionine adenosyltransferase 2 subunit beta-like [KO:K00789] [EC:2.5.1.6]
113421666  methionine adenosyltransferase 2 subunit beta-like [KO:K00789] [EC:2.5.1.6]
113419147  MAT1A; S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
113411551  AMD1; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
113423145  SRM; spermidine synthase [KO:K00797] [EC:2.5.1.16]
113416827  SMS; spermine synthase [KO:K00802] [EC:2.5.1.22]
113415044  MTAP; S-methyl-5'-thioadenosine phosphorylase isoform X1 [KO:K00772] [EC:2.4.2.28]
113424414  LACC1; laccase domain-containing protein 1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
113409781  MRI1; methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
113410239  APIP; methylthioribulose-1-phosphate dehydratase isoform X1 [KO:K08964] [EC:4.2.1.109]
113417847  ENOPH1; enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
113410639  ADI1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
113423472  TAT; tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
113424979  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
113422237  L-amino-acid oxidase [KO:K03334] [EC:1.4.3.2]
113428977  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
113430285  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
113422928  GNMT; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
113417659  DNMT1; DNA (cytosine-5)-methyltransferase 1 [KO:K00558] [EC:2.1.1.37]
113414601  DNMT3A; DNA (cytosine-5)-methyltransferase 3A isoform X1 [KO:K17398] [EC:2.1.1.37]
113426726  DNMT3B; DNA (cytosine-5)-methyltransferase 3B [KO:K17399] [EC:2.1.1.37]
113421337  AHCY; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
113418821  S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
113418945  S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
113418535  BCAT2; branched-chain-amino-acid aminotransferase, mitochondrial isoform X1 [KO:K00826] [EC:2.6.1.42]
113419043  BCAT1; branched-chain-amino-acid aminotransferase, cytosolic [KO:K00826] [EC:2.6.1.42]
113411375  AGXT2; alanine--glyoxylate aminotransferase 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
113410612  GCLC; glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
113414784  GCLM; glutamate--cysteine ligase regulatory subunit [KO:K11205]
113422863  GSS; glutathione synthetase isoform X1 [KO:K21456] [EC:6.3.2.3]
113415831  CDO1; cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
113414401  GOT1L1; putative aspartate aminotransferase, cytoplasmic 2 [KO:K14454] [EC:2.6.1.1]
113412851  GOT1; aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
113426613  GOT2; aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
113432759  MPST; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
113432761  TST; thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
113412570  L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
113419051  LDHB; L-lactate dehydrogenase B chain [KO:K00016] [EC:1.1.1.27]
113412684  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
113415157  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
113423286  SDS; L-serine dehydratase/L-threonine deaminase [KO:K17989] [EC:4.3.1.17 4.3.1.19]
113423289  SDSL; serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
113421444  PHGDH; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
113416862  PSAT1; phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
nss00010  Glycolysis / Gluconeogenesis
nss00250  Alanine, aspartate and glutamate metabolism
nss00260  Glycine, serine and threonine metabolism
nss00290  Valine, leucine and isoleucine biosynthesis
nss00430  Taurine and hypotaurine metabolism
nss00480  Glutathione metabolism
nss00620  Pyruvate metabolism
nss00640  Propanoate metabolism
nss00770  Pantothenate and CoA biosynthesis
nss00900  Terpenoid backbone biosynthesis
nss00920  Sulfur metabolism
KO pathway
ko00270   
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