KEGG   PATHWAY: oga04146
Entry
oga04146                    Pathway                                
Name
Peroxisome - Otolemur garnettii (small-eared galago)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
oga04146  Peroxisome
oga04146

Other DBs
GO: 0005777
Organism
Otolemur garnettii (small-eared galago) [GN:oga]
Gene
100954129  PEX16; peroxisomal biogenesis factor 16 [KO:K13335]
100946986  peroxisomal biogenesis factor 3-like [KO:K13336]
100961738  PEX3; peroxisomal biogenesis factor 3 [KO:K13336]
105887511  PEX19; peroxisomal biogenesis factor 19 [KO:K13337]
100944896  ABCD3; ATP-binding cassette sub-family D member 3 [KO:K05677] [EC:7.6.2.4]
100951089  PEX1; peroxisome biogenesis factor 1 [KO:K13338]
100950410  PEX6; peroxisome biogenesis factor 6 isoform X2 [KO:K13339]
100940638  PEX26; peroxisome assembly protein 26 [KO:K13340]
100942605  PEX7; peroxisomal biogenesis factor 7 [KO:K13341]
100951475  PEX5; peroxisomal biogenesis factor 5 [KO:K13342]
100951158  PEX5L; PEX5-related protein isoform X5 [KO:K13342]
100956823  PEX14; peroxisomal membrane protein PEX14 isoform X2 [KO:K13343]
100966766  PEX13; peroxisome biogenesis factor 13 [KO:K13344]
100958610  PEX12; peroxisome assembly protein 12 [KO:K13345]
100965951  PEX10; peroxisome biogenesis factor 10 isoform X1 [KO:K13346]
100944776  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
100947152  PXMP2; peroxisomal membrane protein 2 [KO:K13347]
100953864  MPV17; protein Mpv17 isoform X1 [KO:K13348]
100960683  MPV17L; mpv17-like protein isoform X1 [KO:K13349]
100955129  PXMP4; peroxisomal membrane protein 4 [KO:K13350]
105888115  LOW QUALITY PROTEIN: peroxisomal membrane protein 11A-like [KO:K13351]
100949333  PEX11A; peroxisomal membrane protein 11A [KO:K13351]
100956710  PEX11B; peroxisomal membrane protein 11B isoform X1 [KO:K13352]
100963712  PEX11G; peroxisomal membrane protein 11C [KO:K13353]
100963994  SLC25A17; peroxisomal membrane protein PMP34 [KO:K13354]
100942962  HACL1; 2-hydroxyacyl-CoA lyase 1 isoform X2 [KO:K12261] [EC:4.1.2.63]
100966147  AMACR; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
100963396  PHYH; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
100951813  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
100943743  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 isoform X2 [KO:K00232] [EC:1.3.3.6]
100958565  ACOX2; peroxisomal acyl-coenzyme A oxidase 2 isoform X1 [KO:K10214] [EC:1.17.99.3]
100966879  HSD17B4; peroxisomal multifunctional enzyme type 2 isoform X1 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
100942517  SCP2; non-specific lipid-transfer protein [KO:K08764] [EC:2.3.1.176]
100957082  acyl-coenzyme A amino acid N-acyltransferase 2 [KO:K00659] [EC:2.3.1.65 3.1.2.2]
100957390  bile acid-CoA:amino acid N-acyltransferase isoform X1 [KO:K00659] [EC:2.3.1.65 3.1.2.2]
100965096  EHHADH; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
100947919  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
100966778  DECR2; peroxisomal 2,4-dienoyl-CoA reductase [KO:K13237] [EC:1.3.1.124]
100951737  ECH1; LOW QUALITY PROTEIN: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [KO:K12663] [EC:5.3.3.21]
100947429  ABCD1; ATP-binding cassette sub-family D member 1 isoform X3 [KO:K05675] [EC:7.6.2.4]
100951785  ABCD2; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
100948600  ABCD4; ATP-binding cassette sub-family D member 4 isoform X1 [KO:K05678] [EC:7.6.2.8]
100966005  SLC27A2; very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
100944923  ACSL5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
100962839  ACSL3; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
100947291  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X2 [KO:K01897] [EC:6.2.1.3]
100958751  ACSL6; long-chain-fatty-acid--CoA ligase 6 isoform X2 [KO:K01897] [EC:6.2.1.3]
100960693  ACSL1; long-chain-fatty-acid--CoA ligase 1 isoform X2 [KO:K01897] [EC:6.2.1.3]
100947848  PECR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
100949329  ECI2; enoyl-CoA delta isomerase 2, mitochondrial isoform X1 [KO:K13239] [EC:5.3.3.8]
100952191  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 isoform X2 [KO:K17879] [EC:3.6.1.77]
100955631  NUDT12; peroxisomal NADH pyrophosphatase NUDT12 isoform X1 [KO:K03426] [EC:3.6.1.22]
100942775  NUDT13; nucleoside diphosphate-linked moiety X motif 13 [KO:K03426] [EC:3.6.1.22]
100960723  NUDT19; nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
100965931  ACOT8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
100966800  CRAT; carnitine O-acetyltransferase isoform X2 [KO:K00624] [EC:2.3.1.7]
100941306  CROT; peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
100947044  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
100957655  GNPAT; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
100951879  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
100957774  FAR1; fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
100958504  FAR2; fatty acyl-CoA reductase 2 isoform X1 [KO:K13356] [EC:1.2.1.84]
100961216  MVK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
100967005  PMVK; phosphomevalonate kinase isoform X1 [KO:K13273] [EC:2.7.4.2]
100943592  AGXT; serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
100957840  DAO; LOW QUALITY PROTEIN: D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
100951490  DDO; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
100963724  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
100961812  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
100956508  PAOX; peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
100946238  PIPOX; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
100958224  HMGCL; hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X1 [KO:K01640] [EC:4.1.3.4]
100960992  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform X1 [KO:K01640] [EC:4.1.3.4]
100967107  HAO2; hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
100952171  HAO1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
100942335  CAT; catalase [KO:K03781] [EC:1.11.1.6]
100963243  PRDX5; peroxiredoxin-5, mitochondrial isoform X1 [KO:K11187] [EC:1.11.1.24]
100957400  superoxide dismutase [Cu-Zn]-like [KO:K04565] [EC:1.15.1.1]
100948748  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
100952149  superoxide dismutase [Cu-Zn]-like [KO:K04565] [EC:1.15.1.1]
100953881  SOD2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
100958618  NOS2; LOW QUALITY PROTEIN: nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
100952277  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
100958729  EPHX2; bifunctional epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
100963420  GSTK1; glutathione S-transferase kappa 1 [KO:K13299] [EC:2.5.1.18]
100964035  XDH; xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
100967159  dehydrogenase/reductase SDR family member 4 [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
oga00071  Fatty acid degradation
oga00120  Primary bile acid biosynthesis
oga00230  Purine metabolism
oga00564  Glycerophospholipid metabolism
oga00565  Ether lipid metabolism
oga00830  Retinol metabolism
oga00900  Terpenoid backbone biosynthesis
oga03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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