KEGG   PATHWAY: oke00270
Entry
oke00270                    Pathway                                
Name
Cysteine and methionine metabolism - Oncorhynchus keta (chum salmon)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
oke00270  Cysteine and methionine metabolism
oke00270

Module
oke_M00034  Methionine salvage pathway [PATH:oke00270]
oke_M00035  Methionine degradation [PATH:oke00270]
oke_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:oke00270]
Other DBs
GO: 0006534 0006555
Organism
Oncorhynchus keta (chum salmon) [GN:oke]
Gene
118401425  cystathionine gamma-lyase-like [KO:K01758] [EC:4.4.1.1]
118388621  cystathionine gamma-lyase-like isoform X1 [KO:K01758] [EC:4.4.1.1]
118374352  kyat1; kynurenine--oxoglutarate transaminase 1 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
118362322  kynurenine--oxoglutarate transaminase 3-like [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
118371529  cbsa; cystathionine beta-synthase a isoform X1 [KO:K01697] [EC:4.2.1.22]
118386170  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
118374699  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
118385459  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
118371634  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
118378297  zgc:172121; homocysteine S-methyltransferase [KO:K00547] [EC:2.1.1.10]
118385194  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
118393248  S-adenosylmethionine synthase-like isoform X1 [KO:K00789] [EC:2.5.1.6]
118369872  S-adenosylmethionine synthase isoform X1 [KO:K00789] [EC:2.5.1.6]
118387639  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
118372724  mat2al; methionine adenosyltransferase II, alpha-like isoform X1 [KO:K00789] [EC:2.5.1.6]
118389765  mat2b; methionine adenosyltransferase 2 subunit beta isoform X1 [KO:K00789] [EC:2.5.1.6]
118358378  S-adenosylmethionine synthase isoform X1 [KO:K00789] [EC:2.5.1.6]
127910578  S-adenosylmethionine synthase-like isoform X1 [KO:K00789] [EC:2.5.1.6]
118386816  S-adenosylmethionine decarboxylase proenzyme-like isoform X1 [KO:K01611] [EC:4.1.1.50]
118398737  amd1; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
118360999  srm; spermidine synthase [KO:K00797] [EC:2.5.1.16]
118385058  spermine synthase-like isoform X1 [KO:K00802] [EC:2.5.1.22]
118390429  spermine synthase-like [KO:K00802] [EC:2.5.1.22]
118370524  S-methyl-5'-thioadenosine phosphorylase isoform X1 [KO:K00772] [EC:2.4.2.28]
118378653  S-methyl-5'-thioadenosine phosphorylase isoform X1 [KO:K00772] [EC:2.4.2.28]
118373982  lacc1; purine nucleoside phosphorylase LACC1 isoform X1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
127922371  methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
118382183  methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
118370921  methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
118372723  enolase-phosphatase E1 isoform X1 [KO:K09880] [EC:3.1.3.77]
118387834  enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
118368457  acireductone dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
118396611  tyrosine aminotransferase-like [KO:K00815] [EC:2.6.1.5]
118401321  tyrosine aminotransferase-like [KO:K00815] [EC:2.6.1.5]
118373662  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
118397336  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
118402591  gnmt; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
118365413  DNA (cytosine-5)-methyltransferase 1-like isoform X1 [KO:K00558] [EC:2.1.1.37]
118384544  DNA (cytosine-5)-methyltransferase 1-like isoform X1 [KO:K00558] [EC:2.1.1.37]
118362859  DNA (cytosine-5)-methyltransferase 3A-like isoform X2 [KO:K17398] [EC:2.1.1.37]
118368079  DNA (cytosine-5)-methyltransferase 3A-like [KO:K17398] [EC:2.1.1.37]
118375661  DNA (cytosine-5)-methyltransferase 3A-like isoform X1 [KO:K17398] [EC:2.1.1.37]
118359913  DNA (cytosine-5)-methyltransferase 3A-like isoform X1 [KO:K17399] [EC:2.1.1.37]
118360816  DNA (cytosine-5)-methyltransferase 3A-like [KO:K17399] [EC:2.1.1.37]
118364023  DNA (cytosine-5)-methyltransferase 3B-like isoform X1 [KO:K17399] [EC:2.1.1.37]
118361107  DNA (cytosine-5)-methyltransferase 3B-like isoform X1 [KO:K17399] [EC:2.1.1.37]
118364195  uncharacterized protein LOC118364195 [KO:K17399] [EC:2.1.1.37]
118380973  S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
118370062  adenosylhomocysteinase B [KO:K01251] [EC:3.13.2.1]
118381666  ahcyl1; S-adenosylhomocysteine hydrolase-like protein 1 [KO:K01251] [EC:3.13.2.1]
118370955  putative adenosylhomocysteinase 3 isoform X2 [KO:K01251] [EC:3.13.2.1]
118388542  S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
118396025  putative adenosylhomocysteinase 3 isoform X1 [KO:K01251] [EC:3.13.2.1]
118366207  putative adenosylhomocysteinase 3 isoform X1 [KO:K01251] [EC:3.13.2.1]
118399875  S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
118392317  putative adenosylhomocysteinase 3 isoform X1 [KO:K01251] [EC:3.13.2.1]
118371524  branched-chain-amino-acid aminotransferase, cytosolic-like [KO:K00826] [EC:2.6.1.42]
118365657  branched-chain-amino-acid aminotransferase, cytosolic isoform X1 [KO:K00826] [EC:2.6.1.42]
118366254  branched-chain-amino-acid aminotransferase, cytosolic-like [KO:K00826] [EC:2.6.1.42]
118391571  agxt2; alanine--glyoxylate aminotransferase 2, mitochondrial isoform X1 [KO:K00827] [EC:2.6.1.44 2.6.1.40]
118402761  gclc; glutamate--cysteine ligase catalytic subunit isoform X1 [KO:K11204] [EC:6.3.2.2]
118398349  glutamate--cysteine ligase catalytic subunit-like [KO:K11204] [EC:6.3.2.2]
118390971  gclm; glutamate--cysteine ligase regulatory subunit [KO:K11205]
118359143  glutamate--cysteine ligase regulatory subunit-like [KO:K11205]
118361017  glutathione synthetase-like [KO:K21456] [EC:6.3.2.3]
118392871  cysteine dioxygenase type 1-like [KO:K00456] [EC:1.13.11.20]
118357995  cysteine dioxygenase type 1-like isoform X1 [KO:K00456] [EC:1.13.11.20]
118402783  aspartate aminotransferase, cytoplasmic-like [KO:K14454] [EC:2.6.1.1]
118398614  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
118358334  got1l1; putative aspartate aminotransferase, cytoplasmic 2 isoform X1 [KO:K14454] [EC:2.6.1.1]
118401250  aspartate aminotransferase, mitochondrial-like [KO:K14455] [EC:2.6.1.1]
118359910  aspartate aminotransferase, mitochondrial-like [KO:K14455] [EC:2.6.1.1]
118393908  aspartate aminotransferase, mitochondrial-like [KO:K14455] [EC:2.6.1.1]
118396684  got2a; aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
118374238  3-mercaptopyruvate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
127929983  3-mercaptopyruvate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
118384376  3-mercaptopyruvate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
118395999  L-lactate dehydrogenase B-A chain isoform X1 [KO:K00016] [EC:1.1.1.27]
118396273  ldha; L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
118366155  L-lactate dehydrogenase B chain [KO:K00016] [EC:1.1.1.27]
118392273  L-lactate dehydrogenase B chain-like [KO:K00016] [EC:1.1.1.27]
118400893  ldhbb; L-lactate dehydrogenase B-B chain isoform X1 [KO:K00016] [EC:1.1.1.27]
118400941  L-lactate dehydrogenase A chain-like [KO:K00016] [EC:1.1.1.27]
118365001  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
118389171  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
127918269  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
118380079  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
118390028  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
118391101  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
118369060  sdsl; LOW QUALITY PROTEIN: serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
118362703  L-serine dehydratase/L-threonine deaminase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
127906001  L-serine dehydratase/L-threonine deaminase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
118381937  L-serine dehydratase/L-threonine deaminase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
118386027  phgdh; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
118367089  D-3-phosphoglycerate dehydrogenase-like isoform X1 [KO:K00058] [EC:1.1.1.95 1.1.1.399]
118372989  LOW QUALITY PROTEIN: phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
oke00010  Glycolysis / Gluconeogenesis
oke00250  Alanine, aspartate and glutamate metabolism
oke00260  Glycine, serine and threonine metabolism
oke00290  Valine, leucine and isoleucine biosynthesis
oke00430  Taurine and hypotaurine metabolism
oke00480  Glutathione metabolism
oke00620  Pyruvate metabolism
oke00640  Propanoate metabolism
oke00770  Pantothenate and CoA biosynthesis
oke00900  Terpenoid backbone biosynthesis
oke00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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