PATHWAY: pcaf00470
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Entry
pcaf00470 Pathway
Name
D-Amino acid metabolism - Paraburkholderia caffeinilytica
Class
Metabolism; Metabolism of other amino acids
BRITE hierarchy
Pathway map
pcaf00470
D-Amino acid metabolism
Ortholog table
Module
pcaf_M00947
D-Arginine racemization, D-arginine => L-arginine [PATH:
pcaf00470
]
Other DBs
GO:
0046416
Organism
Paraburkholderia caffeinilytica [GN:
pcaf
]
Gene
DSC91_003803
alanine racemase [KO:
K01775
] [EC:
5.1.1.1
]
DSC91_005665
cytochrome c550 [KO:
K00824
] [EC:
2.6.1.21
]
DSC91_004887
D-alanine--D-alanine ligase [KO:
K01921
] [EC:
6.3.2.4
]
DSC91_003960
aspartate racemase [KO:
K25316
] [EC:
5.1.1.10
]
DSC91_001212
glutaminase [KO:
K01425
] [EC:
3.5.1.2
]
DSC91_000094
L-asparaginase [KO:
K05597
] [EC:
3.5.1.38
]
DSC91_006480
glutamate racemase [KO:
K01776
] [EC:
5.1.1.3
]
DSC91_004891
UDP-N-acetylmuramoylalanine--D-glutamate ligase [KO:
K01925
] [EC:
6.3.2.9
]
DSC91_003834
hypothetical protein [KO:
K22210
] [EC:
4.2.1.48
]
DSC91_007304
hypothetical protein [KO:
K22210
] [EC:
4.2.1.48
]
DSC91_006555
aspartate racemase [KO:
K01779
] [EC:
5.1.1.13
]
DSC91_000222
aspartate racemase [KO:
K01779
] [EC:
5.1.1.13
]
DSC91_005805
amino acid deaminase [KO:
K01753
] [EC:
4.3.1.18
]
DSC91_005024
diaminopimelate decarboxylase [KO:
K01586
] [EC:
4.1.1.20
]
DSC91_007188
FAD-dependent oxidoreductase [KO:
K19746
] [EC:
1.4.99.6
]
DSC91_002143
ornithine cyclodeaminase [KO:
K19744
] [EC:
1.4.1.25
]
DSC91_001682
proline racemase family protein [KO:
K01777
] [EC:
5.1.1.4
]
DSC91_002492
hydroxyproline-2-epimerase [KO:
K12658
] [EC:
5.1.1.8
]
DSC91_000916
hydroxyproline-2-epimerase [KO:
K12658
] [EC:
5.1.1.8
]
DSC91_000919
pyridine nucleotide-disulfide oxidoreductase [KO:
K22549
] [EC:1.5.99.-]
DSC91_000917
D-amino-acid oxidase [KO:
K21061
] [EC:1.5.99.-]
DSC91_002675
(2Fe-2S)-binding protein [KO:
K22550
]
DSC91_002488
2,5-dioxovalerate dehydrogenase [KO:
K13877
] [EC:
1.2.1.26
]
DSC91_001461
2,5-dioxovalerate dehydrogenase [KO:
K13877
] [EC:
1.2.1.26
]
DSC91_001479
2,5-dioxovalerate dehydrogenase [KO:
K13877
] [EC:
1.2.1.26
]
DSC91_001738
2,5-dioxovalerate dehydrogenase [KO:
K13877
] [EC:
1.2.1.26
]
DSC91_005007
amino acid dehydrogenase [KO:
K00285
] [EC:
1.4.5.1
]
DSC91_000095
D-amino-acid dehydrogenase [KO:
K00285
] [EC:
1.4.5.1
]
DSC91_001372
amino acid dehydrogenase [KO:
K00285
] [EC:
1.4.5.1
]
DSC91_001487
amino acid dehydrogenase [KO:
K00285
] [EC:
1.4.5.1
]
Compound
C00022
Pyruvate
C00025
L-Glutamate
C00026
2-Oxoglutarate
C00036
Oxaloacetate
C00037
Glycine
C00041
L-Alanine
C00047
L-Lysine
C00049
L-Aspartate
C00062
L-Arginine
C00064
L-Glutamine
C00065
L-Serine
C00073
L-Methionine
C00077
L-Ornithine
C00079
L-Phenylalanine
C00084
Acetaldehyde
C00097
L-Cysteine
C00133
D-Alanine
C00134
Putrescine
C00135
L-Histidine
C00148
L-Proline
C00166
Phenylpyruvate
C00188
L-Threonine
C00217
D-Glutamate
C00402
D-Aspartate
C00431
5-Aminopentanoate
C00433
2,5-Dioxopentanoate
C00515
D-Ornithine
C00624
N-Acetyl-L-glutamate
C00666
LL-2,6-Diaminoheptanedioate
C00680
meso-2,6-Diaminoheptanedioate
C00692
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739
D-Lysine
C00740
D-Serine
C00763
D-Proline
C00792
D-Arginine
C00793
D-Cysteine
C00819
D-Glutamine
C00820
D-Threonine
C00855
D-Methionine
C00993
D-Alanyl-D-alanine
C01110
5-Amino-2-oxopentanoic acid
C01157
Hydroxyproline
C01180
4-Methylthio-2-oxobutanoic acid
C01667
Bacitracin
C01672
Cadaverine
C01726
D-Lombricine
C02237
5-Oxo-D-proline
C02265
D-Phenylalanine
C02855
N-Phospho-D-lombricine
C03239
6-Amino-2-oxohexanoate
C03341
2-Amino-4-oxopentanoic acid
C03440
cis-4-Hydroxy-D-proline
C03564
1-Pyrroline-2-carboxylate
C03771
5-Guanidino-2-oxopentanoate
C03933
5-D-Glutamyl-D-glutamyl-peptide
C03943
(2R,4S)-2,4-Diaminopentanoate
C04260
O-D-Alanyl-poly(ribitol phosphate)
C04282
1-Pyrroline-4-hydroxy-2-carboxylate
C04457
D-Alanyl-alanyl-poly(glycerolphosphate)
C05161
(2R,5S)-2,5-Diaminohexanoate
C05620
N-Acetyl-D-phenylalanine
C05825
2-Amino-5-oxohexanoate
C05939
Linatine
C05941
2-Oxo-4-hydroxy-5-aminovalerate
C05942
Pyrrole-2-carboxylate
C06419
D-Histidine
C22024
Staphylopine
C22025
(2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611
N-Acetyl-D-glutamate
Reference
PMID:
33788945
Authors
Miyamoto T, Homma H
Title
D-Amino acid metabolism in bacteria.
Journal
J Biochem 170:5-13 (2021)
DOI:
10.1093/jb/mvab043
Reference
PMID:
27230378
Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
Journal
Science 352:1105-9 (2016)
DOI:
10.1126/science.aaf1018
Related
pathway
pcaf00010
Glycolysis / Gluconeogenesis
pcaf00020
Citrate cycle (TCA cycle)
pcaf00250
Alanine, aspartate and glutamate metabolism
pcaf00260
Glycine, serine and threonine metabolism
pcaf00270
Cysteine and methionine metabolism
pcaf00300
Lysine biosynthesis
pcaf00310
Lysine degradation
pcaf00330
Arginine and proline metabolism
pcaf00340
Histidine metabolism
pcaf00360
Phenylalanine metabolism
pcaf00550
Peptidoglycan biosynthesis
pcaf00620
Pyruvate metabolism
KO pathway
ko00470
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integrated database retrieval system
