KEGG   PATHWAY: pcin00900
Entry
pcin00900                   Pathway                                
Name
Terpenoid backbone biosynthesis - Prosopis cineraria
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
pcin00900  Terpenoid backbone biosynthesis
pcin00900

Module
pcin_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:pcin00900]
pcin_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:pcin00900]
pcin_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:pcin00900]
Other DBs
GO: 0009240 0016091
Organism
Prosopis cineraria [GN:pcin]
Gene
129319700  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
129293645  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
129294246  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
129310145  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
129311282  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic isoform X1 [KO:K01662] [EC:2.2.1.7]
129284623  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
129291167  LOW QUALITY PROTEIN: 1-deoxy-D-xylulose 5-phosphate reductoisomerase-like [KO:K00099] [EC:1.1.1.267]
129320903  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [KO:K00099] [EC:1.1.1.267]
129306940  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic isoform X1 [KO:K00991] [EC:2.7.7.60]
129302850  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic isoform X1 [KO:K00919] [EC:2.7.1.148]
129322759  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [KO:K01770] [EC:4.6.1.12]
129314229  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic-like [KO:K03526] [EC:1.17.7.1 1.17.7.3]
129315466  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic isoform X1 [KO:K03526] [EC:1.17.7.1 1.17.7.3]
129292032  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic [KO:K03527] [EC:1.17.7.4]
129285755  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like [KO:K03527] [EC:1.17.7.4]
129307496  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
129285345  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
129303845  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
129319624  hydroxymethylglutaryl-CoA synthase-like [KO:K01641] [EC:2.3.3.10]
129322148  hydroxymethylglutaryl-CoA synthase-like isoform X1 [KO:K01641] [EC:2.3.3.10]
129297237  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [KO:K00021] [EC:1.1.1.34]
129303705  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [KO:K00021] [EC:1.1.1.34]
129298995  LOW QUALITY PROTEIN: mevalonate kinase-like [KO:K00869] [EC:2.7.1.36]
129299838  mevalonate kinase-like [KO:K00869] [EC:2.7.1.36]
129297815  phosphomevalonate kinase, peroxisomal-like isoform X1 [KO:K00938] [EC:2.7.4.2]
129284329  phosphomevalonate kinase, peroxisomal-like isoform X1 [KO:K00938] [EC:2.7.4.2]
129311037  phosphomevalonate kinase, peroxisomal isoform X1 [KO:K00938] [EC:2.7.4.2]
129318980  diphosphomevalonate decarboxylase MVD2, peroxisomal isoform X1 [KO:K01597] [EC:4.1.1.33]
129321401  isopentenyl phosphate kinase [KO:K06981] [EC:2.7.4.26]
129291704  isopentenyl-diphosphate Delta-isomerase I [KO:K01823] [EC:5.3.3.2]
129287299  farnesyl pyrophosphate synthase 1 [KO:K00787] [EC:2.5.1.1 2.5.1.10]
129322375  solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [KO:K14066] [EC:2.5.1.1]
129311234  LOW QUALITY PROTEIN: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [KO:K14066] [EC:2.5.1.1]
129296075  geranylgeranyl pyrophosphate synthase, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
129296195  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
129311796  geranylgeranyl pyrophosphate synthase, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
129286025  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
129303566  geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
129304036  LOW QUALITY PROTEIN: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
129314989  solanesyl diphosphate synthase 1, chloroplastic isoform X1 [KO:K05356] [EC:2.5.1.84 2.5.1.85]
129318878  cis-prenyltransferase 4, chloroplastic-like isoform X1 [KO:K11778] [EC:2.5.1.87]
129296083  dehydrodolichyl diphosphate synthase 2-like [KO:K11778] [EC:2.5.1.87]
129322108  dehydrodolichyl diphosphate synthase CPT3 isoform X1 [KO:K11778] [EC:2.5.1.87]
129322582  uncharacterized protein LOC129322582 [KO:K11778] [EC:2.5.1.87]
129297454  cis-prenyltransferase 4, chloroplastic-like [KO:K11778] [EC:2.5.1.87]
129297457  cis-prenyltransferase 4, chloroplastic-like isoform X1 [KO:K11778] [EC:2.5.1.87]
129317079  dehydrodolichyl diphosphate synthase 2-like [KO:K11778] [EC:2.5.1.87]
129318012  geranylgeranyl diphosphate reductase, chloroplastic-like [KO:K10960] [EC:1.3.1.83 1.3.1.111]
129320891  geranylgeranyl diphosphate reductase, chloroplastic [KO:K10960] [EC:1.3.1.83 1.3.1.111]
129297098  tricyclene synthase TPS4, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
129312385  tricyclene synthase TPS4, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
129313230  LOW QUALITY PROTEIN: tricyclene synthase TPS4, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
129315484  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [KO:K05955] [EC:2.5.1.58 2.5.1.59]
129306930  protein farnesyltransferase subunit beta [KO:K05954] [EC:2.5.1.58]
129318807  CAAX prenyl protease 2 isoform X1 [KO:K08658] [EC:3.4.26.1]
129288601  CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
129321282  protein-S-isoprenylcysteine O-methyltransferase A-like [KO:K00587] [EC:2.1.1.100]
129311398  protein-S-isoprenylcysteine O-methyltransferase A [KO:K00587] [EC:2.1.1.100]
129292966  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 [KO:K15889] [EC:3.1.1.-]
129321242  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X1 [KO:K15889] [EC:3.1.1.-]
129302970  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 isoform X1 [KO:K15889] [EC:3.1.1.-]
129319828  farnesylcysteine lyase [KO:K05906] [EC:1.8.3.5 1.8.3.6]
129295592  uncharacterized protein LOC129295592 isoform X1 [KO:K15891] [EC:1.1.1.354]
129299085  uncharacterized protein LOC129299085 isoform X1 [KO:K15891] [EC:1.1.1.354]
129318535  probable phytol kinase 3, chloroplastic [KO:K15892] [EC:2.7.1.216]
129299174  probable phytol kinase 3, chloroplastic [KO:K15892] [EC:2.7.1.216]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
pcin00010  Glycolysis / Gluconeogenesis
pcin00100  Steroid biosynthesis
pcin00130  Ubiquinone and other terpenoid-quinone biosynthesis
pcin00270  Cysteine and methionine metabolism
pcin00510  N-Glycan biosynthesis
pcin00902  Monoterpenoid biosynthesis
pcin00904  Diterpenoid biosynthesis
pcin00906  Carotenoid biosynthesis
pcin00908  Zeatin biosynthesis
pcin00909  Sesquiterpenoid and triterpenoid biosynthesis
KO pathway
ko00900   
LinkDB

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