KEGG   PATHWAY: pcp02025
Entry
pcp02025                    Pathway                                
Name
Biofilm formation - Pseudomonas aeruginosa - Pseudomonas chlororaphis subsp. aurantiaca
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. The main key actors relevant in the regulation of biofilm formation by Pseudomonas aeruginosa include cAMP/Vfr signaling, quorum sensing (QS) systems, Gac/Rsm pathway, and c-di-GMP signaling. cAMP/Vfr signaling regulates the transcription of hundreds of genes encoding diverse virulence factors, including the type 2 secretion system and type 3 secretion system and their associated toxins, type IV pili, and flagella. It is demonstrated that the accumulation of cAMP inhibits the attachment phase of biofilm formation. The QS systems are arranged hierarchically with the las system positively regulating both the rhl and PQS systems. These three QS systems are involved in the regulation of virulence factor production, biofilm maturation, and motility phenotypes. GacS/GacA two-component system is promoting the expression of two small regulatory RNAs, RsmY and RsmZ, which sequester the translational repressor RsmA. Titration of RsmA induces the production of sessile and biofilm determinants, whereas free RsmA leads to a planktonic and more virulent lifestyle. c-di-GMP is a ubiquitous bacterial second messenger. Synthesis and degradation of c-di-GMP is facilitated by diguanylate cyclases (DGC) and phosphodiesterases (PDE). High intracellular levels of c-di-GMP evoke the processes leading to the production of biofilm matrix, while a decrease in its level causes an increase in cell motility and transition into the planktonic forms of growth.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
pcp02025  Biofilm formation - Pseudomonas aeruginosa
pcp02025

Organism
Pseudomonas chlororaphis subsp. aurantiaca [GN:pcp]
Gene
JM49_02210  chemotaxis protein [KO:K02660]
JM49_02205  protein PilI [KO:K02659]
JM49_02215  histidine kinase [KO:K06596]
JM49_02220  chemotaxis protein [KO:K06598]
JM49_02200  chemotaxis protein CheY [KO:K02658]
JM49_02195  pilus assembly protein PilG [KO:K02657]
JM49_27665  serine/threonine protein phosphatase [KO:K03651] [EC:3.1.4.53]
JM49_03245  cyclic AMP receptor protein [KO:K10914]
JM49_29440  Crp/Fnr family transcriptional regulator [KO:K10914]
JM49_29535  transcriptional regulator [KO:K10914]
JM49_22880  cyclic nucleotide-binding protein [KO:K10914]
JM49_22155  ATPase AAA [KO:K10941]
JM49_05485  acyl-homoserine-lactone synthase [KO:K13061] [EC:2.3.1.184]
JM49_17800  acyl-homoserine-lactone synthase [KO:K13061] [EC:2.3.1.184]
JM49_17795  LuxR family transcriptional regulator [KO:K18099]
JM49_05480  transcriptional regulator [KO:K18099]
JM49_17790  MFS transporter [KO:K18100] [EC:2.4.1.-]
JM49_03215  anthranilate synthase component I [KO:K01657] [EC:4.1.3.27]
JM49_03225  anthranilate synthase component II [KO:K01658] [EC:4.1.3.27]
JM49_08600  chemotaxis protein CheY [KO:K07678] [EC:2.7.13.3]
JM49_04210  histidine kinase [KO:K20971]
JM49_27090  histidine kinase [KO:K20972]
JM49_12585  chemotaxis protein CheY [KO:K07689]
JM49_20020  carbon storage regulator CsrA [KO:K03563]
JM49_08335  carbon storage regulator [KO:K03563]
JM49_09760  histidine kinase [KO:K20973] [EC:2.7.13.3]
JM49_21605  histidine kinase [KO:K20974] [EC:2.7.13.3]
JM49_22100  histidine kinase [KO:K20976]
JM49_22105  chemotaxis protein CheY [KO:K20977]
JM49_22110  anti-anti-sigma factor [KO:K20978]
JM49_08450  flagellar biosynthesis anti-sigma factor FlgM [KO:K02398]
JM49_22035  fliA; flagellar biosynthesis sigma factor [KO:K02405]
JM49_12890  serine/threonine protein kinase [KO:K11912] [EC:2.7.11.1]
JM49_13245  protein kinase [KO:K11912] [EC:2.7.11.1]
JM49_00905  protein phosphatase [KO:K11915] [EC:3.1.3.16]
JM49_12885  PppA [KO:K11915] [EC:3.1.3.16]
JM49_12880  type VI secretion system protein ImpM [KO:K11890]
JM49_00900  type VI secretion protein VasK [KO:K11891]
JM49_12875  type VI secretion protein IcmF [KO:K11891]
JM49_00890  type VI secretion protein [KO:K11893]
JM49_12865  type VI secretion protein [KO:K11893]
JM49_12855  signal peptide protein [KO:K11913]
JM49_12850  type VI secretion protein ImpA [KO:K11902]
JM49_00825  type VI secretion protein [KO:K11901]
JM49_12845  hypothetical protein [KO:K11901]
JM49_00830  type VI secretion protein [KO:K11900]
JM49_12840  EvpB family type VI secretion protein [KO:K11900]
JM49_29325  Major exported protein [KO:K11903]
JM49_10400  Major exported protein [KO:K11903]
JM49_12835  Hcp1 family type VI secretion system effector [KO:K11903]
JM49_02260  Major exported protein [KO:K11903]
JM49_00860  type VI secretion protein [KO:K11895]
JM49_12805  type VI secretion protein [KO:K11895]
JM49_00865  ATPase AAA [KO:K11907]
JM49_12800  ATPase AAA [KO:K11907]
JM49_24665  chemotaxis protein [KO:K13487]
JM49_24645  chemotaxis protein CheA [KO:K13490]
JM49_24660  chemotaxis protein CheW [KO:K13488]
JM49_24650  chemotaxis protein CheW [KO:K13489]
JM49_24640  chemotaxis protein CheY [KO:K13491] [EC:3.1.1.61]
JM49_24635  diguanylate cyclase [KO:K11444] [EC:2.7.7.65]
JM49_07225  DeoR faimly transcriptional regulator [KO:K21019] [EC:2.7.7.65]
JM49_26615  DeoR faimly transcriptional regulator [KO:K21021] [EC:2.7.7.65]
JM49_16420  histidine kinase [KO:K21023] [EC:2.7.7.65]
JM49_07085  diguanylate cyclase [KO:K21024] [EC:3.1.4.52]
JM49_04905  capsular biosynthesis protein [KO:K20997]
JM49_25180  mannose-1-phosphate guanylyltransferase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
JM49_04900  mannose-1-phosphate guanylyltransferase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
JM49_09345  cpsB; mannose-1-phosphate guanyltransferase [KO:K16011] [EC:2.7.7.13 5.3.1.8]
JM49_04895  glycosyl transferase [KO:K25205]
JM49_04890  polysaccharide biosynthesis protein [KO:K20987]
JM49_04885  lipopolysaccharide biosynthesis protein [KO:K20998]
JM49_04880  glycosyl transferase family 1 [KO:K20999]
JM49_04875  beta-xylosidase [KO:K21000]
JM49_04870  glycosyl transferase [KO:K21001]
JM49_04865  glycosyl transferase family 1 [KO:K21002]
JM49_04860  membrane protein [KO:K21003]
JM49_04850  membrane protein [KO:K21004]
JM49_25135  hemolysin D [KO:K19291] [EC:2.4.1.33]
Compound
C00044  GTP
C00575  3',5'-Cyclic AMP
C11837  N-Butyryl-L-homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16463  3',5'-Cyclic diGMP
C18076  5'-Phosphoguanylyl(3'->5')guanosine
C20643  2-Heptyl-4(1H)-quinolone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
Reference
  Authors
Coggan KA, Wolfgang MC
  Title
Global regulatory pathways and cross-talk control pseudomonas aeruginosa environmental lifestyle and virulence phenotype.
  Journal
Curr Issues Mol Biol 14:47-70 (2012)
Reference
  Authors
Rasamiravaka T, Labtani Q, Duez P, El Jaziri M
  Title
The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
  Journal
Biomed Res Int 2015:759348 (2015)
DOI:10.1155/2015/759348
Reference
  Authors
Valentini M, Filloux A
  Title
Biofilms and Cyclic di-GMP (c-di-GMP) Signaling: Lessons from Pseudomonas aeruginosa and Other Bacteria.
  Journal
J Biol Chem 291:12547-55 (2016)
DOI:10.1074/jbc.R115.711507
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
  Authors
Fulcher NB, Holliday PM, Klem E, Cann MJ, Wolfgang MC
  Title
The Pseudomonas aeruginosa Chp chemosensory system regulates intracellular cAMP levels by modulating adenylate cyclase activity.
  Journal
Mol Microbiol 76:889-904 (2010)
DOI:10.1111/j.1365-2958.2010.07135.x
Reference
  Authors
Marsden AE, Intile PJ, Schulmeyer KH, Simmons-Patterson ER, Urbanowski ML, Wolfgang MC, Yahr TL
  Title
Vfr Directly Activates exsA Transcription To Regulate Expression of the Pseudomonas aeruginosa Type III Secretion System.
  Journal
J Bacteriol 198:1442-50 (2016)
DOI:10.1128/JB.00049-16
Reference
  Authors
Brencic A, Lory S
  Title
Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA.
  Journal
Mol Microbiol 72:612-32 (2009)
DOI:10.1111/j.1365-2958.2009.06670.x
Reference
  Authors
Hsu JL, Chen HC, Peng HL, Chang HY
  Title
Characterization of the histidine-containing phosphotransfer protein B-mediated multistep phosphorelay system in Pseudomonas aeruginosa PAO1.
  Journal
J Biol Chem 283:9933-44 (2008)
DOI:10.1074/jbc.M708836200
Reference
  Authors
Guvener ZT, Harwood CS
  Title
Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces.
  Journal
Mol Microbiol 66:1459-73 (2007)
DOI:10.1111/j.1365-2958.2007.06008.x
Reference
  Authors
Irie Y, Starkey M, Edwards AN, Wozniak DJ, Romeo T, Parsek MR
  Title
Pseudomonas aeruginosa biofilm matrix polysaccharide Psl is regulated transcriptionally by RpoS and post-transcriptionally by RsmA.
  Journal
Mol Microbiol 78:158-72 (2010)
DOI:10.1111/j.1365-2958.2010.07320.x
Related
pathway
pcp02024  Quorum sensing
pcp02040  Flagellar assembly
pcp03070  Bacterial secretion system
KO pathway
ko02025   
LinkDB

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