KEGG   PATHWAY: peq00270
Entry
peq00270                    Pathway                                
Name
Cysteine and methionine metabolism - Phalaenopsis equestris
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
peq00270  Cysteine and methionine metabolism
peq00270

Module
peq_M00021  Cysteine biosynthesis, serine => cysteine [PATH:peq00270]
peq_M00034  Methionine salvage pathway [PATH:peq00270]
peq_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:peq00270]
Other DBs
GO: 0006534 0006555
Organism
Phalaenopsis equestris [GN:peq]
Gene
110031619  probable serine acetyltransferase 4 [KO:K00640] [EC:2.3.1.30]
110027526  probable serine acetyltransferase 1 [KO:K00640] [EC:2.3.1.30]
110036339  probable serine acetyltransferase 2 isoform X1 [KO:K00640] [EC:2.3.1.30]
110029676  cysteine synthase-like [KO:K01738] [EC:2.5.1.47]
110030706  cysteine synthase [KO:K01738] [EC:2.5.1.47]
110033761  cysteine synthase [KO:K01738] [EC:2.5.1.47]
110031987  cysteine synthase 2 [KO:K01738] [EC:2.5.1.47]
110025102  bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial [KO:K13034] [EC:2.5.1.47 4.4.1.9]
110037835  cystathionine beta-lyase, chloroplastic [KO:K01760] [EC:4.4.1.13]
110024322  homocysteine S-methyltransferase 2-like isoform X1 [KO:K00547] [EC:2.1.1.10]
110030698  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 2 isoform X1 [KO:K00549] [EC:2.1.1.14]
110023202  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 2-like isoform X1 [KO:K00549] [EC:2.1.1.14]
110031618  S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
110031375  S-adenosylmethionine synthase 5-like [KO:K00789] [EC:2.5.1.6]
110031862  S-adenosylmethionine decarboxylase proenzyme 4 [KO:K01611] [EC:4.1.1.50]
110038049  S-adenosylmethionine decarboxylase proenzyme-like [KO:K01611] [EC:4.1.1.50]
110023339  S-adenosylmethionine decarboxylase proenzyme-like [KO:K01611] [EC:4.1.1.50]
110038767  spermine synthase isoform X1 [KO:K00797] [EC:2.5.1.16]
110024965  spermidine synthase 2 isoform X1 [KO:K00797] [EC:2.5.1.16]
110032766  nicotianamine synthase-like [KO:K05953] [EC:2.5.1.43]
110031405  5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2-like [KO:K01244] [EC:3.2.2.16]
110027954  methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
110025462  methylthioribose-1-phosphate isomerase isoform X1 [KO:K08963] [EC:5.3.1.23]
110018736  probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 [KO:K16054] [EC:4.2.1.109 3.1.3.77]
110038935  probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 isoform X1 [KO:K16054] [EC:4.2.1.109 3.1.3.77]
110018363  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase homolog 2-like [KO:K08967] [EC:1.13.11.53 1.13.11.54]
110028526  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2-like [KO:K08967] [EC:1.13.11.53 1.13.11.54]
110021338  uncharacterized protein LOC110021338 [KO:K23977] [EC:2.6.1.117]
110030433  nicotianamine aminotransferase A-like [KO:K00815] [EC:2.6.1.5]
110019341  nicotianamine aminotransferase B-like [KO:K00815] [EC:2.6.1.5]
110033742  uncharacterized protein LOC110033742 [KO:K00837] [EC:2.6.1.-]
110022032  LOW QUALITY PROTEIN: methionine gamma-lyase-like [KO:K01761] [EC:4.4.1.11]
110024041  methionine gamma-lyase [KO:K01761] [EC:4.4.1.11]
110024734  DNA (cytosine-5)-methyltransferase CMT3-like isoform X1 [KO:K00558] [EC:2.1.1.37]
110023642  DNA (cytosine-5)-methyltransferase 1B-like [KO:K00558] [EC:2.1.1.37]
110034095  DNA (cytosine-5)-methyltransferase 1-like [KO:K00558] [EC:2.1.1.37]
110020106  DNA (cytosine-5)-methyltransferase CMT2-like [KO:K00558] [EC:2.1.1.37]
110025386  uncharacterized protein LOC110025386 [KO:K17398] [EC:2.1.1.37]
110038379  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
110030504  LOW QUALITY PROTEIN: adenosylhomocysteinase-like [KO:K01251] [EC:3.13.2.1]
110030067  1-aminocyclopropane-1-carboxylate synthase-like [KO:K20772] [EC:4.4.1.14]
110019694  1-aminocyclopropane-1-carboxylate synthase 7-like [KO:K01762] [EC:4.4.1.14]
110030670  1-aminocyclopropane-1-carboxylate synthase 7-like [KO:K01762] [EC:4.4.1.14]
110029746  1-aminocyclopropane-1-carboxylate synthase 7-like [KO:K01762] [EC:4.4.1.14]
110038028  1-aminocyclopropane-1-carboxylate synthase 3-like [KO:K01762] [EC:4.4.1.14]
110038434  1-aminocyclopropane-1-carboxylate synthase 3-like [KO:K01762] [EC:4.4.1.14]
110036729  1-aminocyclopropane-1-carboxylate oxidase 1-like [KO:K05933] [EC:1.14.17.4]
110034969  1-aminocyclopropane-1-carboxylate oxidase 1-like [KO:K05933] [EC:1.14.17.4]
110035000  1-aminocyclopropane-1-carboxylate oxidase 2 [KO:K05933] [EC:1.14.17.4]
110026262  1-aminocyclopropane-1-carboxylate oxidase 2-like [KO:K05933] [EC:1.14.17.4]
110036329  1-aminocyclopropane-1-carboxylate oxidase 1-like [KO:K05933] [EC:1.14.17.4]
110018547  1-aminocyclopropane-1-carboxylate oxidase-like [KO:K05933] [EC:1.14.17.4]
110018548  1-aminocyclopropane-1-carboxylate oxidase-like [KO:K05933] [EC:1.14.17.4]
110020225  aspartokinase 2, chloroplastic-like [KO:K00928] [EC:2.7.2.4]
110024472  aspartokinase 2, chloroplastic-like [KO:K00928] [EC:2.7.2.4]
110031494  bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [KO:K12524] [EC:2.7.2.4 1.1.1.3]
110030190  uncharacterized protein LOC110030190 [KO:K00133] [EC:1.2.1.11]
110036203  uncharacterized protein LOC110036203 isoform X1 [KO:K00003] [EC:1.1.1.3]
110039508  probable cystathionine gamma-synthase 2 [KO:K01739] [EC:2.5.1.48]
110019046  LOW QUALITY PROTEIN: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [KO:K00826] [EC:2.6.1.42]
110037063  branched-chain-amino-acid aminotransferase 5, chloroplastic-like [KO:K00826] [EC:2.6.1.42]
110017921  branched-chain-amino-acid aminotransferase 5, chloroplastic-like isoform X1 [KO:K00826] [EC:2.6.1.42]
110017922  branched-chain-amino-acid aminotransferase 2, chloroplastic-like [KO:K00826] [EC:2.6.1.42]
110020129  alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
110021374  alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
110021412  alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like [KO:K00827] [EC:2.6.1.44 2.6.1.40]
110026083  glutamate--cysteine ligase A, chloroplastic [KO:K01919] [EC:6.3.2.2]
110037893  glutathione synthetase, chloroplastic [KO:K21456] [EC:6.3.2.3]
110020645  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
110029779  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
110029155  aspartate aminotransferase, chloroplastic [KO:K00811] [EC:2.6.1.1]
110022179  thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial-like isoform X1 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
110036944  LOW QUALITY PROTEIN: L-lactate dehydrogenase A-like [KO:K00016] [EC:1.1.1.27]
110027872  putative D-cysteine desulfhydrase 1, mitochondrial [KO:K05396] [EC:4.4.1.15]
110029309  putative L-cysteine desulfhydrase 1 [KO:K22207] [EC:4.4.1.28]
110031066  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
110029654  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
110039052  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
110019464  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
110029861  cysteine synthase-like [KO:K22846] [EC:2.5.1.144]
110039453  D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [KO:K00058] [EC:1.1.1.95 1.1.1.399]
110032546  D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like isoform X1 [KO:K00058] [EC:1.1.1.95 1.1.1.399]
110025620  phosphoserine aminotransferase 2, chloroplastic-like [KO:K00831] [EC:2.6.1.52]
110020618  phosphoserine aminotransferase 1, chloroplastic-like [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
peq00010  Glycolysis / Gluconeogenesis
peq00250  Alanine, aspartate and glutamate metabolism
peq00260  Glycine, serine and threonine metabolism
peq00290  Valine, leucine and isoleucine biosynthesis
peq00430  Taurine and hypotaurine metabolism
peq00480  Glutathione metabolism
peq00620  Pyruvate metabolism
peq00640  Propanoate metabolism
peq00770  Pantothenate and CoA biosynthesis
peq00900  Terpenoid backbone biosynthesis
peq00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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