KEGG   PATHWAY: pfor00270
Entry
pfor00270                   Pathway                                
Name
Cysteine and methionine metabolism - Poecilia formosa (Amazon molly)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
pfor00270  Cysteine and methionine metabolism
pfor00270

Module
pfor_M00034  Methionine salvage pathway [PATH:pfor00270]
pfor_M00035  Methionine degradation [PATH:pfor00270]
pfor_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:pfor00270]
Other DBs
GO: 0006534 0006555
Organism
Poecilia formosa (Amazon molly) [GN:pfor]
Gene
103130688  cth; cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
103151478  kynurenine--oxoglutarate transaminase 1-like [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
103139861  kyat3; kynurenine--oxoglutarate transaminase 3 isoform X2 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
103135930  kynurenine--oxoglutarate transaminase 1-like [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
103132488  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
103140297  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
103147202  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
103141748  betaine--homocysteine S-methyltransferase 1 isoform X2 [KO:K00544] [EC:2.1.1.5]
103135835  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
103154332  mtr; methionine synthase [KO:K00548] [EC:2.1.1.13]
103151012  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
103151851  S-adenosylmethionine synthase isoform X1 [KO:K00789] [EC:2.5.1.6]
103151854  S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
103141060  mat2b; methionine adenosyltransferase 2 subunit beta isoform X3 [KO:K00789] [EC:2.5.1.6]
103147722  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
103148532  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
103140744  amd1; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
103138926  srm; spermidine synthase [KO:K00797] [EC:2.5.1.16]
103141419  sms; spermine synthase [KO:K00802] [EC:2.5.1.22]
103148475  mtap; S-methyl-5'-thioadenosine phosphorylase isoform X1 [KO:K00772] [EC:2.4.2.28]
103156467  lacc1; laccase domain-containing protein 1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
103150535  mri1; methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
103153583  apip; methylthioribulose-1-phosphate dehydratase isoform X1 [KO:K08964] [EC:4.2.1.109]
103151011  enoph1; enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
103153761  adi1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
103129258  tat; tyrosine aminotransferase isoform X1 [KO:K00815] [EC:2.6.1.5]
103156791  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
103149034  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
103149035  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
103149095  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
103149096  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
103156786  L-amino-acid oxidase-like isoform X1 [KO:K03334] [EC:1.4.3.2]
103154189  gnmt; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
103143736  dnmt1; DNA (cytosine-5)-methyltransferase 1 isoform X2 [KO:K00558] [EC:2.1.1.37]
103153066  DNA (cytosine-5)-methyltransferase 3A-like isoform X1 [KO:K17398] [EC:2.1.1.37]
103148352  DNA (cytosine-5)-methyltransferase 3A-like isoform X1 [KO:K17398] [EC:2.1.1.37]
103148371  DNA (cytosine-5)-methyltransferase 3A [KO:K17398] [EC:2.1.1.37]
103148174  dnmt3b; DNA (cytosine-5)-methyltransferase 3B [KO:K17399] [EC:2.1.1.37]
103139174  uncharacterized protein LOC103139174 [KO:K17399] [EC:2.1.1.37]
103148175  DNA (cytosine-5)-methyltransferase 3B-like isoform X2 [KO:K17399] [EC:2.1.1.37]
103150675  adenosylhomocysteinase 2-like [KO:K01251] [EC:3.13.2.1]
103151052  ahcyl1; adenosylhomocysteinase 2 isoform X1 [KO:K01251] [EC:3.13.2.1]
103133705  adenosylhomocysteinase 2-like isoform X1 [KO:K01251] [EC:3.13.2.1]
103156365  putative adenosylhomocysteinase 3 isoform X1 [KO:K01251] [EC:3.13.2.1]
103156963  ahcy; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
103144934  branched-chain-amino-acid aminotransferase, cytosolic-like isoform X1 [KO:K00826] [EC:2.6.1.42]
103155718  branched-chain-amino-acid aminotransferase, cytosolic-like [KO:K00826] [EC:2.6.1.42]
103142735  agxt2; alanine--glyoxylate aminotransferase 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
103134068  gclc; glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
103138458  gclm; glutamate--cysteine ligase regulatory subunit [KO:K11205]
103151325  gss; glutathione synthetase isoform X1 [KO:K21456] [EC:6.3.2.3]
103141756  cdo1; cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
103152216  got1; aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
103154486  aspartate aminotransferase, cytoplasmic-like isoform X1 [KO:K14454] [EC:2.6.1.1]
103136591  got2; aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
103147376  thiosulfate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
103147379  3-mercaptopyruvate sulfurtransferase-like isoform X1 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
103154850  3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
103151604  L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
103151609  L-lactate dehydrogenase A chain-like [KO:K00016] [EC:1.1.1.27]
103134408  L-lactate dehydrogenase C chain isoform X1 [KO:K00016] [EC:1.1.1.27]
103155455  ldhb; L-lactate dehydrogenase B chain [KO:K00016] [EC:1.1.1.27]
103150763  mdh1; malate dehydrogenase, cytoplasmic isoform X2 [KO:K00025] [EC:1.1.1.37]
103152461  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
103136570  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
103136730  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
103147156  sds; L-serine dehydratase/L-threonine deaminase [KO:K17989] [EC:4.3.1.17 4.3.1.19]
103154191  serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
103134273  phgdh; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
103142033  psat1; phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
pfor00010  Glycolysis / Gluconeogenesis
pfor00250  Alanine, aspartate and glutamate metabolism
pfor00260  Glycine, serine and threonine metabolism
pfor00290  Valine, leucine and isoleucine biosynthesis
pfor00430  Taurine and hypotaurine metabolism
pfor00480  Glutathione metabolism
pfor00620  Pyruvate metabolism
pfor00640  Propanoate metabolism
pfor00770  Pantothenate and CoA biosynthesis
pfor00900  Terpenoid backbone biosynthesis
pfor00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

DBGET integrated database retrieval system