KEGG   PATHWAY: plep04146
Entry
plep04146                   Pathway                                
Name
Peroxisome - Plectropomus leopardus (leopard coralgrouper)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
plep04146  Peroxisome
plep04146

Other DBs
GO: 0005777
Organism
Plectropomus leopardus (leopard coralgrouper) [GN:plep]
Gene
121964100  pex16; peroxisomal biogenesis factor 16 [KO:K13335]
121955288  pex3; peroxisomal biogenesis factor 3 [KO:K13336]
121951416  pex19; peroxisomal biogenesis factor 19 [KO:K13337]
121961009  abcd3a; ATP-binding cassette sub-family D member 3a [KO:K05677] [EC:7.6.2.4]
121958086  pex1; peroxisome biogenesis factor 1 [KO:K13338]
121941563  pex6; LOW QUALITY PROTEIN: peroxisome assembly factor 2 [KO:K13339]
121961255  pex26; peroxisome assembly protein 26 isoform X1 [KO:K13340]
121955552  pex7; LOW QUALITY PROTEIN: peroxisomal biogenesis factor 7 [KO:K13341]
121966464  pex5la; PEX5-related protein [KO:K13342]
121945243  pex5; peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
121947242  pex14; peroxisomal membrane protein PEX14 [KO:K13343]
121954533  pex13; peroxisome biogenesis factor 13 [KO:K13344]
121940395  peroxisome assembly protein 12-like [KO:K13345]
121947106  pex10; LOW QUALITY PROTEIN: peroxisome biogenesis factor 10 [KO:K13346]
121960697  pex2; peroxisome biogenesis factor 2 isoform X1 [KO:K06664]
121944255  pxmp2; peroxisomal membrane protein 2 [KO:K13347]
121940129  mpv17-like protein 2 [KO:K13348]
121955490  mpv17; protein Mpv17 [KO:K13348]
121962084  mpv17-like protein 2 [KO:K13348]
121963222  mpv17-like protein 2 [KO:K13348]
121941597  mpv17-like protein [KO:K13349]
121956086  mpv17l; mpv17-like protein [KO:K13349]
121945109  si:ch211-120k19.1; mpv17-like protein [KO:K13349]
121963856  mpv17-like protein [KO:K13349]
121951397  pxmp4; peroxisomal membrane protein 4 [KO:K13350]
121949703  pex11a; peroxisomal membrane protein 11A [KO:K13351]
121957774  pex11b; peroxisomal membrane protein 11B [KO:K13352]
121940999  pex11g; peroxisomal membrane protein 11C [KO:K13353]
121956254  peroxisomal membrane protein PMP34 [KO:K13354]
121957219  slc25a17; peroxisomal membrane protein PMP34 [KO:K13354]
121945760  hacl1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
121959835  amacr; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
121961369  phyh; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
121941856  acox1; peroxisomal acyl-coenzyme A oxidase 1 [KO:K00232] [EC:1.3.3.6]
121962194  LOW QUALITY PROTEIN: peroxisomal acyl-coenzyme A oxidase 3-like [KO:K00232] [EC:1.3.3.6]
121944362  hsd17b4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
121951322  scp2a; sterol carrier protein 2 [KO:K08764] [EC:2.3.1.176]
121953471  peroxisomal succinyl-coenzyme A thioesterase-like isoform X1 [KO:K00659] [EC:2.3.1.65 3.1.2.2]
121953523  peroxisomal succinyl-coenzyme A thioesterase-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
121948720  ehhadh; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
121941572  3-ketoacyl-CoA thiolase, peroxisomal-like [KO:K07513] [EC:2.3.1.16]
121958915  decr2; peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing] isoform X1 [KO:K13237] [EC:1.3.1.124]
121947135  abcd1; ATP-binding cassette sub-family D member 1 [KO:K05675] [EC:7.6.2.4]
121961364  ATP-binding cassette sub-family D member 2-like [KO:K05676] [EC:7.6.2.4]
121955151  abcd4; ATP-binding cassette sub-family D member 4 [KO:K05678] [EC:7.6.2.8]
121942786  very long-chain acyl-CoA synthetase-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
121943253  zgc:158482; very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
121949787  very long-chain acyl-CoA synthetase-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
121950476  zgc:101540; hsFATP2a_ACSVL_like domain-containing protein [KO:K08746] [EC:6.2.1.- 6.2.1.3]
121941715  acsl1a; long-chain-fatty-acid--CoA ligase 1a isoform X1 [KO:K01897] [EC:6.2.1.3]
121952740  acsl6; long-chain-fatty-acid--CoA ligase 6 [KO:K01897] [EC:6.2.1.3]
121958548  acsl5; LOW QUALITY PROTEIN: long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
121947904  long-chain-fatty-acid--CoA ligase 1-like [KO:K01897] [EC:6.2.1.3]
121948281  acsl4a; long-chain-fatty-acid--CoA ligase 4 [KO:K01897] [EC:6.2.1.3]
121943564  acsl3a; long-chain-fatty-acid--CoA ligase 3a isoform X1 [KO:K01897] [EC:6.2.1.3]
121944413  acsl2; long-chain-fatty-acid--CoA ligase 1 [KO:K01897] [EC:6.2.1.3]
121951243  acsl3b; long-chain-fatty-acid--CoA ligase 3b [KO:K01897] [EC:6.2.1.3]
121937942  peroxisomal trans-2-enoyl-CoA reductase-like [KO:K07753] [EC:1.3.1.38]
121951896  LOW QUALITY PROTEIN: peroxisomal trans-2-enoyl-CoA reductase-like [KO:K07753] [EC:1.3.1.38]
121960405  eci2; LOW QUALITY PROTEIN: enoyl-CoA delta isomerase 2, mitochondrial [KO:K13239] [EC:5.3.3.8]
121950731  nudt7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
121966059  NAD-capped RNA hydrolase NUDT12-like [KO:K03426] [EC:3.6.1.22]
121965937  NAD(P)H pyrophosphatase NUDT13, mitochondrial-like [KO:K03426] [EC:3.6.1.22]
121944615  nudt19; nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
121950338  acot8; LOW QUALITY PROTEIN: acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
121958145  carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
121948812  carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
121944088  carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
121961541  carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
121961569  carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
121961614  carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
121961718  carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
121961719  carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
121945831  crot; peroxisomal carnitine O-octanoyltransferase isoform X1 [KO:K05940] [EC:2.3.1.137]
121950648  mlycd; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
121955297  gnpat; dihydroxyacetone phosphate acyltransferase [KO:K00649] [EC:2.3.1.42]
121955466  gnpat2; dihydroxyacetone phosphate acyltransferase [KO:K00649] [EC:2.3.1.42]
121949218  agps; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
121961165  si:dkey-97m3.1; fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
121950048  far1; LOW QUALITY PROTEIN: fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
121944509  mvk; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
121964938  pmvk; phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
121941140  agxta; alanine--glyoxylate and serine--pyruvate aminotransferase a [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
121951646  agxtb; alanine--glyoxylate and serine--pyruvate aminotransferase b [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
121944554  D-amino-acid oxidase-like [KO:K00273] [EC:1.4.3.3]
121953619  ddo; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
121949344  idh1; LOW QUALITY PROTEIN: isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
121949762  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
121961704  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
121966912  peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like [KO:K00308] [EC:1.5.3.13]
121954868  paox; peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
121961702  peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like [KO:K00308] [EC:1.5.3.13]
121942766  peroxisomal sarcosine oxidase-like [KO:K00306] [EC:1.5.3.1 1.5.3.7]
121943021  peroxisomal sarcosine oxidase-like [KO:K00306] [EC:1.5.3.1 1.5.3.7]
121953412  hmgcl; hydroxymethylglutaryl-CoA lyase, mitochondrial [KO:K01640] [EC:4.1.3.4]
121954505  hmgcll1; 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
121967011  hydroxyacid oxidase 1-like [KO:K11517] [EC:1.1.3.15]
121949279  hao2; hydroxyacid oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
121957056  LOW QUALITY PROTEIN: hydroxyacid oxidase 1-like [KO:K11517] [EC:1.1.3.15]
121950053  cat; LOW QUALITY PROTEIN: catalase [KO:K03781] [EC:1.11.1.6]
121952617  peroxiredoxin-5, mitochondrial-like [KO:K11187] [EC:1.11.1.24]
121952618  LOW QUALITY PROTEIN: peroxiredoxin-5, mitochondrial-like [KO:K11187] [EC:1.11.1.24]
121952850  sod1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
121962358  sod2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
121942078  prdx2; peroxiredoxin-2 [KO:K13279] [EC:1.11.1.24]
121951603  prdx1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
121939287  ephx2; bifunctional epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
121966159  glutathione S-transferase kappa 1-like [KO:K13299] [EC:2.5.1.18]
121962722  LOW QUALITY PROTEIN: xanthine dehydrogenase/oxidase-like [KO:K00106] [EC:1.17.1.4 1.17.3.2]
121962004  dhrs4; dehydrogenase/reductase SDR family member 4 [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
plep00071  Fatty acid degradation
plep00120  Primary bile acid biosynthesis
plep00230  Purine metabolism
plep00564  Glycerophospholipid metabolism
plep00565  Ether lipid metabolism
plep00830  Retinol metabolism
plep00900  Terpenoid backbone biosynthesis
plep03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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