KEGG   PATHWAY: pmei00270
Entry
pmei00270                   Pathway                                
Name
Cysteine and methionine metabolism - Poecilia mexicana (shortfin molly)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
pmei00270  Cysteine and methionine metabolism
pmei00270

Module
pmei_M00034  Methionine salvage pathway [PATH:pmei00270]
pmei_M00035  Methionine degradation [PATH:pmei00270]
pmei_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:pmei00270]
Other DBs
GO: 0006534 0006555
Organism
Poecilia mexicana (shortfin molly) [GN:pmei]
Gene
106930558  cth; cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
106913425  ccbl2; kynurenine--oxoglutarate transaminase 3 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
106910348  kynurenine--oxoglutarate transaminase 1-like [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
106930101  kynurenine--oxoglutarate transaminase 1-like [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
106927576  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
106929518  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
106930167  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
106916212  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
106923054  betaine--homocysteine S-methyltransferase 1 isoform X1 [KO:K00544] [EC:2.1.1.5]
106914740  homocysteine S-methyltransferase-like isoform X1 [KO:K00547] [EC:2.1.1.10]
106909143  mtr; methionine synthase [KO:K00548] [EC:2.1.1.13]
106918073  S-adenosylmethionine synthase isoform type-2-like [KO:K00789] [EC:2.5.1.6]
106918544  mat2b; methionine adenosyltransferase 2 subunit beta isoform X1 [KO:K00789] [EC:2.5.1.6]
106926927  S-adenosylmethionine synthase isoform type-2-like [KO:K00789] [EC:2.5.1.6]
106929478  S-adenosylmethionine synthase isoform type-2 [KO:K00789] [EC:2.5.1.6]
106929653  mat2a; S-adenosylmethionine synthase isoform type-2 [KO:K00789] [EC:2.5.1.6]
106925487  S-adenosylmethionine synthase isoform type-2-like [KO:K00789] [EC:2.5.1.6]
106932120  amd1; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
106920311  srm; spermidine synthase [KO:K00797] [EC:2.5.1.16]
106921782  sms; spermine synthase [KO:K00802] [EC:2.5.1.22]
106919334  mtap; S-methyl-5'-thioadenosine phosphorylase isoform X1 [KO:K00772] [EC:2.4.2.28]
106929172  lacc1; laccase domain-containing protein 1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
106917566  mri1; methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
106921630  apip; methylthioribulose-1-phosphate dehydratase isoform X1 [KO:K08964] [EC:4.2.1.109]
106926929  enoph1; enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
106918025  adi1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
106909214  tat; tyrosine aminotransferase isoform X1 [KO:K00815] [EC:2.6.1.5]
106908903  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
106911400  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
106926808  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
106926809  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
106926813  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
106926815  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
106904043  gnmt; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
106915662  dnmt1; DNA (cytosine-5)-methyltransferase 1 isoform X1 [KO:K00558] [EC:2.1.1.37]
106904566  DNA (cytosine-5)-methyltransferase 3A [KO:K17398] [EC:2.1.1.37]
106926993  DNA (cytosine-5)-methyltransferase 3A-like isoform X1 [KO:K17398] [EC:2.1.1.37]
106927686  dnmt3a; DNA (cytosine-5)-methyltransferase 3A isoform X1 [KO:K17398] [EC:2.1.1.37]
106910202  uncharacterized protein LOC106910202 [KO:K17399] [EC:2.1.1.37]
106916660  uncharacterized protein LOC106916660 [KO:K17399] [EC:2.1.1.37]
106910203  DNA (cytosine-5)-methyltransferase 3B-like [KO:K17399] [EC:2.1.1.37]
106912624  adenosylhomocysteinase B-like [KO:K01251] [EC:3.13.2.1]
106916635  putative adenosylhomocysteinase 3 isoform X1 [KO:K01251] [EC:3.13.2.1]
106918505  ahcyl1; adenosylhomocysteinase 2 isoform X1 [KO:K01251] [EC:3.13.2.1]
106926351  adenosylhomocysteinase 2-like isoform X1 [KO:K01251] [EC:3.13.2.1]
106928186  adenosylhomocysteinase 2-like [KO:K01251] [EC:3.13.2.1]
106925714  branched-chain-amino-acid aminotransferase, cytosolic-like isoform X1 [KO:K00826] [EC:2.6.1.42]
106929491  branched-chain-amino-acid aminotransferase, cytosolic-like [KO:K00826] [EC:2.6.1.42]
106918658  agxt2; alanine--glyoxylate aminotransferase 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
106914801  gclc; glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
106930312  gclm; glutamate--cysteine ligase regulatory subunit [KO:K11205]
106919610  glutathione synthetase-like isoform X1 [KO:K21456] [EC:6.3.2.3]
106931232  glutathione synthetase-like [KO:K21456] [EC:6.3.2.3]
106923060  cdo1; cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
106916429  got1; aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
106927082  aspartate aminotransferase, cytoplasmic-like isoform X1 [KO:K14454] [EC:2.6.1.1]
106921977  got2; aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
106919787  3-mercaptopyruvate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
106906898  thiosulfate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
106908428  3-mercaptopyruvate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
106917341  L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
106910616  L-lactate dehydrogenase B chain [KO:K00016] [EC:1.1.1.27]
106929038  L-lactate dehydrogenase C chain isoform X1 [KO:K00016] [EC:1.1.1.27]
106913728  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
106927296  mdh1; malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
106908802  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
106911840  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
106904040  sdsl; serine dehydratase-like isoform X1 [KO:K17989] [EC:4.3.1.17 4.3.1.19]
106921227  sds; L-serine dehydratase/L-threonine deaminase [KO:K17989] [EC:4.3.1.17 4.3.1.19]
106923208  phgdh; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
106925953  psat1; phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
pmei00010  Glycolysis / Gluconeogenesis
pmei00250  Alanine, aspartate and glutamate metabolism
pmei00260  Glycine, serine and threonine metabolism
pmei00290  Valine, leucine and isoleucine biosynthesis
pmei00430  Taurine and hypotaurine metabolism
pmei00480  Glutathione metabolism
pmei00620  Pyruvate metabolism
pmei00640  Propanoate metabolism
pmei00770  Pantothenate and CoA biosynthesis
pmei00900  Terpenoid backbone biosynthesis
pmei00920  Sulfur metabolism
KO pathway
ko00270   
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