KEGG   PATHWAY: pmum00230
Entry
pmum00230                   Pathway                                
Name
Purine metabolism - Prunus mume (Japanese apricot)
Class
Metabolism; Nucleotide metabolism
Pathway map
pmum00230  Purine metabolism
pmum00230

Module
pmum_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pmum00230]
pmum_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pmum00230]
pmum_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pmum00230]
Other DBs
GO: 0006163 0042278
Organism
Prunus mume (Japanese apricot) [GN:pmum]
Gene
103337949  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
103329263  nudix hydrolase 2 isoform X1 [KO:K26956] [EC:3.6.1.13 3.6.1.22]
103326699  nudix hydrolase 10-like isoform X1 [KO:K26956] [EC:3.6.1.13 3.6.1.22]
103324362  nudix hydrolase 2-like [KO:K26956] [EC:3.6.1.13 3.6.1.22]
103339411  nudix hydrolase 23, chloroplastic [KO:K18453] [EC:3.6.1.13 3.6.1.18]
103337345  nudix hydrolase 14, chloroplastic [KO:K18447] [EC:3.6.1.21]
103321420  phosphoglucomutase, cytoplasmic [KO:K01835] [EC:5.4.2.2]
103333427  LOW QUALITY PROTEIN: phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
103331401  ribose-phosphate pyrophosphokinase 1 [KO:K00948] [EC:2.7.6.1]
103336994  ribose-phosphate pyrophosphokinase 1 [KO:K00948] [EC:2.7.6.1]
103335588  amidophosphoribosyltransferase, chloroplastic [KO:K00764] [EC:2.4.2.14]
103319002  phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
103327004  phosphoribosylglycinamide formyltransferase, chloroplastic [KO:K00601] [EC:2.1.2.2]
103319406  probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial [KO:K01952] [EC:6.3.5.3]
103336360  probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial [KO:K01952] [EC:6.3.5.3]
103319615  phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [KO:K01933] [EC:6.3.3.1]
103318670  phosphoribosylaminoimidazole carboxylase, chloroplastic isoform X1 [KO:K11808] [EC:4.1.1.21]
103319595  phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [KO:K01923] [EC:6.3.2.6]
103336648  bifunctional purine biosynthesis protein PurH [KO:K00602] [EC:2.1.2.3 3.5.4.10]
103319711  adenine phosphoribosyltransferase 5 isoform X1 [KO:K00759] [EC:2.4.2.7]
103320416  adenine phosphoribosyltransferase 1 isoform X1 [KO:K00759] [EC:2.4.2.7]
103337199  adenine phosphoribosyltransferase 3 [KO:K00759] [EC:2.4.2.7]
103324062  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
103327688  5'-nucleotidase SurE-like [KO:K03787] [EC:3.1.3.5 3.1.3.6]
103340703  5'-nucleotidase SurE-like [KO:K03787] [EC:3.1.3.5 3.1.3.6]
103336203  hypoxanthine-guanine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
103325646  inosine-5'-monophosphate dehydrogenase 2-like [KO:K00088] [EC:1.1.1.205]
103331674  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
103338020  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
103321577  probable apyrase 6 isoform X1 [KO:K01510] [EC:3.6.1.5]
103330264  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
103338956  apyrase 2 [KO:K14641] [EC:3.6.1.5]
103323740  inosine triphosphate pyrophosphatase [KO:K01519] [EC:3.6.1.66]
103326686  xanthine dehydrogenase 1-like [KO:K00106] [EC:1.17.1.4 1.17.3.2]
103341599  nudix hydrolase 25 [KO:K26955] [EC:3.6.1.17]
103337450  GMP synthase [glutamine-hydrolyzing] [KO:K01951] [EC:6.3.5.2]
103322862  guanylate kinase 2, chloroplastic/mitochondrial [KO:K00942] [EC:2.7.4.8]
103339376  guanylate kinase 2 [KO:K00942] [EC:2.7.4.8]
103330903  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
103336241  ribonucleoside-diphosphate reductase large subunit-like [KO:K10807] [EC:1.17.4.1]
103322854  ribonucleoside-diphosphate reductase small chain A [KO:K10808] [EC:1.17.4.1]
103330333  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
103323362  HD domain-containing protein 2 [KO:K07023] [EC:3.1.3.89]
103341396  HD domain-containing protein C4G3.17 isoform X1 [KO:K07023] [EC:3.1.3.89]
103325328  protein prune homolog [KO:K01514] [EC:3.6.1.11]
103323297  probable GTP diphosphokinase CRSH, chloroplastic [KO:K00951] [EC:2.7.6.5]
103327621  probable GTP diphosphokinase RSH2, chloroplastic [KO:K00951] [EC:2.7.6.5]
103333993  putative GTP diphosphokinase RSH1, chloroplastic [KO:K00951] [EC:2.7.6.5]
103321034  phytosulfokine receptor 1 [KO:K27625] [EC:2.7.11.1 4.6.1.2]
103334958  adenylosuccinate synthetase 2, chloroplastic-like [KO:K01939] [EC:6.3.4.4]
103336697  adenylosuccinate synthetase 2, chloroplastic-like [KO:K01939] [EC:6.3.4.4]
103321644  AMP deaminase-like isoform X2 [KO:K01490] [EC:3.5.4.6]
103341659  AMP deaminase isoform X1 [KO:K01490] [EC:3.5.4.6]
103332354  adenosine kinase 2-like [KO:K00856] [EC:2.7.1.20]
103342145  adenosine kinase 2 [KO:K00856] [EC:2.7.1.20]
103319181  adenylate kinase, chloroplastic [KO:K00939] [EC:2.7.4.3]
103340450  adenylate kinase 1, chloroplastic [KO:K00939] [EC:2.7.4.3]
103338039  adenylate kinase 4 [KO:K00939] [EC:2.7.4.3]
103341365  adenylate kinase 5, chloroplastic [KO:K00939] [EC:2.7.4.3]
103332505  LOW QUALITY PROTEIN: probable adenylate kinase 1, chloroplastic [KO:K00939] [EC:2.7.4.3]
103330359  probable adenylate kinase 7, mitochondrial [KO:K00939] [EC:2.7.4.3]
103335628  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
103342730  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
103322382  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
103322385  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
103340320  cancer-related nucleoside-triphosphatase homolog [KO:K06928] [EC:3.6.1.15]
103340741  ectonucleotide pyrophosphatase/phosphodiesterase family member 3 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
103318568  bis(5'-adenosyl)-triphosphatase [KO:K01522] [EC:3.6.1.29]
103321270  ATP sulfurylase 2 [KO:K13811] [EC:2.7.7.4 2.7.1.25]
103323972  LOW QUALITY PROTEIN: ATP sulfurylase 1, chloroplastic [KO:K13811] [EC:2.7.7.4 2.7.1.25]
103338971  adenylyl-sulfate kinase 3 isoform X1 [KO:K00860] [EC:2.7.1.25]
103336640  adenylyl-sulfate kinase 3 isoform X2 [KO:K00860] [EC:2.7.1.25]
103335089  adenylyl-sulfate kinase 3 [KO:K00860] [EC:2.7.1.25]
103330981  uricase-2 isozyme 2 [KO:K00365] [EC:1.7.3.3]
103331390  uric acid degradation bifunctional protein TTL isoform X1 [KO:K13484] [EC:3.5.2.17 4.1.1.97]
103324747  allantoinase [KO:K01466] [EC:3.5.2.5]
103325498  allantoate deiminase [KO:K02083] [EC:3.5.3.9]
103342603  (S)-ureidoglycine aminohydrolase [KO:K14977] [EC:3.5.3.26]
103324157  ureidoglycolate hydrolase [KO:K18151] [EC:3.5.1.116]
103321982  urease [KO:K01427] [EC:3.5.1.5]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
pmum00030  Pentose phosphate pathway
pmum00220  Arginine biosynthesis
pmum00250  Alanine, aspartate and glutamate metabolism
pmum00260  Glycine, serine and threonine metabolism
pmum00340  Histidine metabolism
pmum00630  Glyoxylate and dicarboxylate metabolism
pmum00730  Thiamine metabolism
pmum00740  Riboflavin metabolism
pmum00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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