KEGG   PATHWAY: pop00630
Entry
pop00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Populus trichocarpa (black cottonwood)
Class
Metabolism; Carbohydrate metabolism
Pathway map
pop00630  Glyoxylate and dicarboxylate metabolism
pop00630

Module
pop_M00012  Glyoxylate cycle [PATH:pop00630]
pop_M00532  Photorespiration [PATH:pop00630]
pop_M00621  Glycine cleavage system [PATH:pop00630]
Other DBs
GO: 0046487 0043648
Organism
Populus trichocarpa (black cottonwood) [GN:pop]
Gene
7491783  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
18106977  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
7458000  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
7471118  acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
7454691  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
7453937  malate dehydrogenase, cytoplasmic isoform X2 [KO:K00025] [EC:1.1.1.37]
7467536  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
7453939  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
18102471  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
7456259  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
7469671  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
7471892  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
7478683  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
7465546  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
18107367  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
18107368  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
7484617  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
18097666  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
112326012  malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
7466294  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
18094999  citrate synthase, mitochondrial isoform X2 [KO:K01647] [EC:2.3.3.1]
7467622  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
18101054  aconitate hydratase 1 isoform X1 [KO:K01681] [EC:4.2.1.3]
7468501  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
18099133  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
18103734  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
7458471  acetyl-CoA acetyltransferase, cytosolic 1 isoform X1 [KO:K00626] [EC:2.3.1.9]
7469336  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
7483556  peroxisomal (S)-2-hydroxyacid oxidase GLO4 isoform X3 [KO:K11517] [EC:1.1.3.15]
7483557  peroxisomal (S)-2-hydroxyacid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
7483558  peroxisomal (S)-2-hydroxyacid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
7490834  glycolate oxidase isoform X2 [KO:K11517] [EC:1.1.3.15]
7472359  glycolate oxidase [KO:K11517] [EC:1.1.3.15]
18095522  glycolate oxidase [KO:K11517] [EC:1.1.3.15]
7496858  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
7492123  catalase-2 isoform X2 [KO:K03781] [EC:1.11.1.6]
7494699  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
7494025  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
7478089  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
7479242  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
7488921  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
7488920  glyoxylate/hydroxypyruvate reductase HPR3 isoform X2 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
7494024  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
112327026  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
7469356  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
7453649  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
18106015  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
7462118  phosphoglycolate phosphatase 1A, chloroplastic isoform X2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
7464598  phosphoglycolate phosphatase 1A, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
4929677  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
127904144  ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
7477424  ribulose bisphosphate carboxylase small subunit, chloroplastic isoform X1 [KO:K01602] [EC:4.1.1.39]
18107762  ribulose bisphosphate carboxylase small subunit, chloroplastic 3 [KO:K01602] [EC:4.1.1.39]
18099496  ribulose bisphosphate carboxylase small subunit, chloroplastic [KO:K01602] [EC:4.1.1.39]
7467988  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
7467398  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
7469050  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
7460760  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
7495696  ferredoxin-dependent glutamate synthase 1, chloroplastic/mitochondrial isoform X1 [KO:K00284] [EC:1.4.7.1]
7458925  ferredoxin-dependent glutamate synthase 1, chloroplastic/mitochondrial [KO:K00284] [EC:1.4.7.1]
7493567  glutamine synthetase cytosolic isozyme 1 [KO:K01915] [EC:6.3.1.2]
7475932  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
7486383  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
7485167  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
18109315  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
18106624  glutamine synthetase cytosolic isozyme 1 [KO:K01915] [EC:6.3.1.2]
7469108  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
18105568  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
7463188  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
7461640  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
7461838  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
7455512  serine hydroxymethyltransferase 1, mitochondrial [KO:K00600] [EC:2.1.2.1]
7469117  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
7462269  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
7497767  serine hydroxymethyltransferase 1, mitochondrial [KO:K00600] [EC:2.1.2.1]
18107098  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
18094907  serine hydroxymethyltransferase 7 isoform X2 [KO:K00600] [EC:2.1.2.1]
7470701  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
18111215  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
18097363  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
7489415  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
7471086  dihydrolipoyl dehydrogenase 2, mitochondrial [KO:K00382] [EC:1.8.1.4]
7485915  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X2 [KO:K00382] [EC:1.8.1.4]
7485860  LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
18096946  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
7453995  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
18094192  glycine cleavage system H protein, mitochondrial [KO:K02437]
7481801  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
7490980  D-glycerate 3-kinase, chloroplastic isoform X3 [KO:K15918] [EC:2.7.1.31]
18096853  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
7455972  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
18096492  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
7461982  formyltetrahydrofolate deformylase 1, mitochondrial [KO:K01433] [EC:3.5.1.10]
18094609  formyltetrahydrofolate deformylase 1, mitochondrial isoform X2 [KO:K01433] [EC:3.5.1.10]
7476417  uncharacterized protein LOC7476417 isoform X1 [KO:K01455] [EC:3.5.1.49]
7479322  probable CoA ligase CCL9 [KO:K22133] [EC:6.2.1.8]
7474048  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pop00010  Glycolysis / Gluconeogenesis
pop00020  Citrate cycle (TCA cycle)
pop00030  Pentose phosphate pathway
pop00053  Ascorbate and aldarate metabolism
pop00071  Fatty acid degradation
pop00230  Purine metabolism
pop00250  Alanine, aspartate and glutamate metabolism
pop00260  Glycine, serine and threonine metabolism
pop00620  Pyruvate metabolism
pop00710  Carbon fixation by Calvin cycle
pop00750  Vitamin B6 metabolism
pop00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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